3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUAACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OGG_089 not in the Motif Atlas
Homologous match to HL_4LFB_019
Geometric discrepancy: 0.1537
The information below is about HL_4LFB_019
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6OGG|1|3|C|862
6OGG|1|3|U|863
6OGG|1|3|A|864
6OGG|1|3|A|865
6OGG|1|3|C|866
6OGG|1|3|G|867

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain J
30S ribosomal protein S5

Coloring options:


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