HL_6OGG_092

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAGAGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_092 not in the Motif Atlas

Homologous match to HL_6CZR_093

Geometric discrepancy: 0.3749

The information below is about HL_6CZR_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGG|1|3|C|1011
6OGG|1|3|A|1012
6OGG|1|3|G|1013
6OGG|1|3|A|1014
6OGG|1|3|G|1015
6OGG|1|3|A|1016
6OGG|1|3|U|1017
6OGG|1|3|G|1018

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S14

Chain X

30S ribosomal protein S19