HL_6OGG_100

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6OGG|1|3|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_100 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.572

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6OGG|1|3|C|1449
6OGG|1|3|U|1450
6OGG|1|3|U|1451
6OGG|1|3|C|1452
6OGG|1|3|G|1453
6OGG|1|3|G|1454

Current chains

Chain 3

16S ribosomal RNA

Nearby chains