HL_6OGG_111
3D structure
- PDB id
- 6OGG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUGUGAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OGG_111 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.3225
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_04259.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6OGG|1|3|U|1075
6OGG|1|3|U|1076
6OGG|1|3|G|1077
6OGG|1|3|U|1078
6OGG|1|3|G|1079
6OGG|1|3|A|1080
6OGG|1|3|A|1081
6OGG|1|3|A|1082
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain J
- 30S ribosomal protein S5
Coloring options: