HL_6OGG_112

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6OGG|1|1|A|781, 6OGG|1|1|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_112 not in the Motif Atlas

Geometric match to HL_4WSB_001

Geometric discrepancy: 0.3815

The information below is about HL_4WSB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6OGG|1|1|U|779
6OGG|1|1|G|780
6OGG|1|1|A|781
6OGG|1|1|A|782
6OGG|1|1|A|783
6OGG|1|1|G|784
6OGG|1|1|G|785

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2