HL_6OGI_047

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGI_047 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2021

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6OGI|1|1|G|1910
6OGI|1|1|U|1911
6OGI|1|1|A|1912
6OGI|1|1|A|1913
6OGI|1|1|C|1914
6OGI|1|1|U|1915
6OGI|1|1|A|1916
6OGI|1|1|U|1917
6OGI|1|1|A|1918
6OGI|1|1|A|1919
6OGI|1|1|C|1920

Current chains

Chain 1

23S ribosomal RNA

Nearby chains