6OGI Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6OGI_001 | 1/1/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_17803.1 | |
| HL_6OGI_002 | 1/1/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_6OGI_003 | 1/1/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_6OGI_006 | 1/1/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_6OGI_007 | 1/1/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_6OGI_008 | 1/1/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_6OGI_009 | 1/1/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_6OGI_010 | 1/1/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_6OGI_011 | 1/1/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_6OGI_012 | 1/1/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_6OGI_013 | 1/1/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
| HL_6OGI_014 | 1/1/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_6OGI_016 | 1/1/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_6OGI_017 | 1/1/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_6OGI_018 | 1/1/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_6OGI_106 | 1/1/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_6OGI_021 | 1/1/744:753 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_6OGI_107 | 1/1/779:785 | No text annotation | ||
| HL_6OGI_023 | 1/1/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6OGI_025 | 1/1/955:962 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_6OGI_026 | 1/1/978:985 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_6OGI_030 | 1/1/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_6OGI_031 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_6OGI_032 | 1/1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_6OGI_033 | 1/1/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_6OGI_034 | 1/1/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_6OGI_038 | 1/1/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_6OGI_039 | 1/1/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6OGI_040 | 1/1/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_6OGI_041 | 1/1/1691:1696 | UNCG | geometric HL_5J7L_011 NA | |
| HL_6OGI_043 | 1/1/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_6OGI_044 | 1/1/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_6OGI_045 | 1/1/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_6OGI_048 | 1/1/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_61418.1 | |
| HL_6OGI_131 | 1/1/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_6OGI_109 | 1/1/2102:2187 | No text annotation | ||
| HL_6OGI_051 | 1/1/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6OGI_052 | 1/1/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6OGI_053 | 1/1/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6OGI_054 | 1/1/2324:2331 | Pseudoknot geometry | homologous HL_4WF9_052 HL_52651.1 | |
| HL_6OGI_132 | 1/1/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_6OGI_056 | 1/1/2374:2379 | GNRA | homologous HL_4WF9_054 HL_34789.1 | |
| HL_6OGI_057 | 1/1/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_6OGI_060 | 1/1/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_6OGI_061 | 1/1/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6OGI_063 | 1/1/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_6OGI_066 | 1/1/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_6OGI_069 | 1/2/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_6OGI_133 | 1/3/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_6OGI_078 | 1/3/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_6OGI_121 | 1/3/375:389 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_6OGI_079 | 1/3/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_6OGI_089 | 1/3/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_6OGI_093 | 1/3/1076:1081 | GNRA | homologous HL_5J7L_023 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6OGI_004 | No text annotation | ||
| HL_6OGI_005 | No text annotation | ||
| HL_6OGI_015 | No text annotation | ||
| HL_6OGI_105 | Mini UNCG | ||
| HL_6OGI_019 | tRNA anticodon loop | ||
| HL_6OGI_020 | GNRA wlth tandem sheared | ||
| HL_6OGI_022 | No text annotation | ||
| HL_6OGI_024 | No text annotation | ||
| HL_6OGI_108 | No text annotation | ||
| HL_6OGI_130 | No text annotation | ||
| HL_6OGI_027 | No text annotation | ||
| HL_6OGI_028 | No text annotation | ||
| HL_6OGI_029 | No text annotation | ||
| HL_6OGI_035 | No text annotation | ||
| HL_6OGI_036 | No text annotation | ||
| HL_6OGI_037 | UNCG | ||
| HL_6OGI_042 | No text annotation | ||
| HL_6OGI_046 | GNRA variation | ||
| HL_6OGI_047 | No text annotation | ||
| HL_6OGI_049 | No text annotation | ||
| HL_6OGI_050 | No text annotation | ||
| HL_6OGI_110 | No text annotation | ||
| HL_6OGI_055 | GNRA with extra cWW | ||
| HL_6OGI_058 | No text annotation | ||
| HL_6OGI_059 | tRNA anticodon loop | ||
| HL_6OGI_111 | GNRA variation | ||
| HL_6OGI_112 | No text annotation | ||
| HL_6OGI_113 | No text annotation | ||
| HL_6OGI_062 | GNRA related | ||
| HL_6OGI_064 | No text annotation | ||
| HL_6OGI_065 | No text annotation | ||
| HL_6OGI_114 | UNCG variation | ||
| HL_6OGI_067 | GNRA | ||
| HL_6OGI_115 | No text annotation | ||
| HL_6OGI_068 | No text annotation | ||
| HL_6OGI_116 | No text annotation | ||
| HL_6OGI_070 | No text annotation | ||
| HL_6OGI_117 | No text annotation | ||
| HL_6OGI_118 | No text annotation | ||
| HL_6OGI_071 | No text annotation | ||
| HL_6OGI_072 | No text annotation | ||
| HL_6OGI_073 | GNRA | ||
| HL_6OGI_074 | No text annotation | ||
| HL_6OGI_134 | No text annotation | ||
| HL_6OGI_075 | tRNA D-loop | ||
| HL_6OGI_076 | GNRA with extra cWW | ||
| HL_6OGI_119 | GNRA | ||
| HL_6OGI_120 | No text annotation | ||
| HL_6OGI_077 | No text annotation | ||
| HL_6OGI_080 | No text annotation | ||
| HL_6OGI_122 | No text annotation | ||
| HL_6OGI_081 | GNRA wlth extra near cWW | ||
| HL_6OGI_123 | No text annotation | ||
| HL_6OGI_082 | No text annotation | ||
| HL_6OGI_124 | tRNA anticodon loop | ||
| HL_6OGI_083 | GNRA-like with tWH | ||
| HL_6OGI_125 | No text annotation | ||
| HL_6OGI_135 | No text annotation | ||
| HL_6OGI_084 | No text annotation | ||
| HL_6OGI_126 | GNRA with extra near cWW | ||
| HL_6OGI_085 | GNRA | ||
| HL_6OGI_127 | No text annotation | ||
| HL_6OGI_136 | No text annotation | ||
| HL_6OGI_086 | No text annotation | ||
| HL_6OGI_087 | No text annotation | ||
| HL_6OGI_088 | GNRA | ||
| HL_6OGI_090 | No text annotation | ||
| HL_6OGI_091 | GNRA | ||
| HL_6OGI_092 | No text annotation | ||
| HL_6OGI_094 | T-loop related | ||
| HL_6OGI_095 | No text annotation | ||
| HL_6OGI_137 | No text annotation | ||
| HL_6OGI_096 | No text annotation | ||
| HL_6OGI_097 | GNRA | ||
| HL_6OGI_128 | No text annotation | ||
| HL_6OGI_098 | No text annotation | ||
| HL_6OGI_099 | No text annotation | ||
| HL_6OGI_138 | No text annotation | ||
| HL_6OGI_129 | No text annotation | ||
| HL_6OGI_100 | No text annotation | ||
| HL_6OGI_101 | GNRA | ||
| HL_6OGI_102 | No text annotation | ||
| HL_6OGI_103 | tRNA anticodon loop | ||
| HL_6OGI_104 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6OGI_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_6OGI_002 | 1/1/36:37, 1/1/442:444 | Single bulged A | homologous IL_7A0S_002 IL_14190.1 | |
| IL_6OGI_003 | 1/1/43:44, 1/1/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_6OGI_004 | 1/1/81:85, 1/1/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_6OGI_005 | 1/1/183:184, 1/1/212:214 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_6OGI_006 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_6OGI_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_6OGI_008 | 1/1/269:271, 1/1/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_6OGI_010 | 1/1/293:295, 1/1/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_6OGI_011 | 1/1/481:484, 1/1/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_6OGI_012 | 1/1/536:539, 1/1/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_6OGI_013 | 1/1/564:566, 1/1/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.1 | |
| IL_6OGI_014 | 1/1/606:610, 1/1/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_6OGI_015 | 1/1/672:674, 1/1/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_6OGI_016 | 1/1/674:678, 1/1/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_6OGI_017 | 1/1/697:698, 1/1/763:765 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_6OGI_018 | 1/1/702:703, 1/1/728:730 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_6OGI_019 | 1/1/703:707, 1/1/724:728 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_6OGI_020 | 1/1/738:740, 1/1/757:758 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_6OGI_021 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_6OGI_022 | 1/1/837:838, 1/1/940:942 | Single stack bend | homologous IL_5J7L_266 NA | |
| IL_6OGI_023 | 1/1/844:847, 1/1/933:934 | 90 degree turn | geometric IL_5J7L_267 NA | |
| IL_6OGI_166 | 1/1/844:848, 1/1/930:934 | No text annotation | homologous IL_5J7L_399 NA | |
| IL_6OGI_024 | 1/1/847:848, 1/1/930:933 | Stack outside cWW | homologous IL_5J7L_268 NA | |
| IL_6OGI_025 | 1/1/850:851, 1/1/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_6OGI_026 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_6OGI_028 | 1/1/864:869, 1/1/908:912 | No text annotation | ||
| IL_6OGI_032 | 1/1/994:996, 1/1/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6OGI_033 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_6OGI_034 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_6OGI_035 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_6OGI_036 | 1/1/1018:1024, 1/1/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_6OGI_037 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_6OGI_038 | 1/1/1031:1034, 1/1/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6OGI_043 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_6OGI_044 | 1/1/1202:1206, 1/1/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_6OGI_045 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6OGI_046 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_6OGI_047 | 1/1/1310:1313, 1/1/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6OGI_048 | 1/1/1319:1323, 1/1/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_6OGI_049 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_6OGI_050 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_6OGI_061 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_6OGI_062 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_6OGI_063 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_74641.1 | |
| IL_6OGI_173 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_6OGI_064 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_6OGI_065 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_6OGI_068 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6OGI_069 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_6OGI_070 | 1/1/1837:1840, 1/1/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_6OGI_071 | 1/1/1841:1842, 1/1/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_78536.1 | |
| IL_6OGI_175 | 1/1/1851:1860, 1/1/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_6OGI_074 | 1/1/1933:1934, 1/1/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_6OGI_075 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_6OGI_076 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_6OGI_077 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6OGI_078 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_6OGI_206 | 1/1/2067:2071, 1/1/2438:2443 | No text annotation | ||
| IL_6OGI_079 | 1/1/2069:2071, 1/1/2438:2442 | Isolated non-canonical cWW pair | geometric IL_7Y2B_001 NA | |
| IL_6OGI_080 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_6OGI_081 | 1/1/2085:2087, 1/1/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.1 | |
| IL_6OGI_084 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_6OGI_085 | 1/1/2295:2323, 1/1/2332:2337 | No text annotation | ||
| IL_6OGI_086 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared | homologous IL_4WF9_087 IL_58355.1 | |
| IL_6OGI_178 | 1/1/2350:2355, 1/1/2362:2367 | No text annotation | ||
| IL_6OGI_087 | 1/1/2401:2403, 1/1/2414:2415 | No text annotation | ||
| IL_6OGI_088 | 1/1/2453:2454, 1/1/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_15011.1 | |
| IL_6OGI_089 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.7 | |
| IL_6OGI_090 | 1/1/2456:2459, 1/1/2493:2495 | Major groove platform with extra pair | geometric IL_7RQB_093 NA | |
| IL_6OGI_179 | 1/1/2456:2461, 1/1/2489:2495 | No text annotation | ||
| IL_6OGI_091 | 1/1/2459:2462, 1/1/2488:2493 | No text annotation | ||
| IL_6OGI_092 | 1/1/2466:2470, 1/1/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_6OGI_093 | 1/1/2507:2512, 1/1/2574:2582 | No text annotation | ||
| IL_6OGI_094 | 1/1/2512:2513, 1/1/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_6OGI_095 | 1/1/2522:2523, 1/1/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_6OGI_097 | 1/1/2591:2592, 1/1/2601:2603 | No text annotation | ||
| IL_6OGI_098 | 1/1/2636:2640, 1/1/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_6OGI_207 | 1/1/2680:2684, 1/1/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_6OGI_180 | 1/1/2687:2691, 1/1/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_6OGI_181 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_6OGI_103 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_6OGI_104 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_6OGI_105 | 1/1/2838:2839, 1/1/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6OGI_106 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_6OGI_107 | 1/1/2847:2852, 1/1/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6OGI_112 | 1/2/71:79, 1/2/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_6OGI_113 | 1/3/30:32, 1/3/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_6OGI_114 | 1/3/44:45, 1/3/396:398 | Single bulged A | geometric IL_4LFB_002 IL_14190.1 | |
| IL_6OGI_115 | 1/3/47:52, 1/3/359:361 | No text annotation | geometric IL_4LFB_003 IL_68149.1 | |
| IL_6OGI_208 | 1/3/54:56, 1/3/356:357 | Minor groove platform | homologous IL_5J7L_004 NA | |
| IL_6OGI_122 | 1/3/242:249, 1/3/275:284 | No text annotation | ||
| IL_6OGI_210 | 1/3/292:293, 1/3/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_6OGI_127 | 1/3/375:376, 1/3/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_6OGI_134 | 1/3/569:575, 1/3/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_6OGI_211 | 1/3/605:612, 1/3/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_6OGI_214 | 1/3/826:829, 1/3/857:874 | No text annotation | ||
| IL_6OGI_144 | 1/3/887:894, 1/3/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_6OGI_155 | 1/3/1247:1253, 1/3/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_6OGI_161 | 1/3/1416:1419, 1/3/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_6OGI_162 | 1/3/1430:1435, 1/3/1466:1470 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_6OGI_163 | 1/3/1438:1442, 1/3/1460:1463 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6OGI_009 | No text annotation | ||
| IL_6OGI_165 | No text annotation | ||
| IL_6OGI_027 | Single bulged G | ||
| IL_6OGI_029 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_201 | Isolated non-canonical cWW pair | ||
| IL_6OGI_030 | Double sheared with non-canonical cWW | ||
| IL_6OGI_031 | Isolated non-canonical cWW pair | ||
| IL_6OGI_202 | No text annotation | ||
| IL_6OGI_039 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_167 | No text annotation | ||
| IL_6OGI_040 | No text annotation | ||
| IL_6OGI_203 | No text annotation | ||
| IL_6OGI_041 | No text annotation | ||
| IL_6OGI_168 | No text annotation | ||
| IL_6OGI_042 | No text annotation | ||
| IL_6OGI_051 | No text annotation | ||
| IL_6OGI_169 | No text annotation | ||
| IL_6OGI_052 | UAA/GAN | ||
| IL_6OGI_053 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_170 | tSH-tHW | ||
| IL_6OGI_054 | No text annotation | ||
| IL_6OGI_055 | Single bulged U | ||
| IL_6OGI_171 | No text annotation | ||
| IL_6OGI_056 | No text annotation | ||
| IL_6OGI_057 | tSH-tHW-tHS | ||
| IL_6OGI_058 | No text annotation | ||
| IL_6OGI_172 | 180 degree turn | ||
| IL_6OGI_059 | Single bulged A | ||
| IL_6OGI_204 | UAA/GAN variation | ||
| IL_6OGI_060 | Triple sheared related | ||
| IL_6OGI_066 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6OGI_067 | No text annotation | ||
| IL_6OGI_174 | No text annotation | ||
| IL_6OGI_072 | Major groove minor groove platform; mini C-loop | ||
| IL_6OGI_073 | No text annotation | ||
| IL_6OGI_205 | UAA/GAN variation | ||
| IL_6OGI_176 | No text annotation | ||
| IL_6OGI_082 | No text annotation | ||
| IL_6OGI_177 | No text annotation | ||
| IL_6OGI_083 | No text annotation | ||
| IL_6OGI_096 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_099 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6OGI_100 | C-loop with extra cWW pair | ||
| IL_6OGI_101 | No text annotation | ||
| IL_6OGI_102 | Intercalated cWW | ||
| IL_6OGI_182 | No text annotation | ||
| IL_6OGI_183 | No text annotation | ||
| IL_6OGI_184 | No text annotation | ||
| IL_6OGI_108 | Major groove intercalation | ||
| IL_6OGI_109 | No text annotation | ||
| IL_6OGI_110 | Major groove minor groove platform; mini C-loop | ||
| IL_6OGI_111 | Symmetric double minor groove platform | ||
| IL_6OGI_116 | Multiple bulged bases | ||
| IL_6OGI_117 | No text annotation | ||
| IL_6OGI_118 | Isolated non-canonical cWW pair | ||
| IL_6OGI_119 | Minor groove platform related | ||
| IL_6OGI_185 | No text annotation | ||
| IL_6OGI_209 | Isolated cWH basepair | ||
| IL_6OGI_120 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_121 | tWH-tWH-tHW-tHW | ||
| IL_6OGI_186 | No text annotation | ||
| IL_6OGI_123 | No text annotation | ||
| IL_6OGI_124 | No text annotation | ||
| IL_6OGI_125 | Single bulged U | ||
| IL_6OGI_187 | Isolated non-canonical cWW pair | ||
| IL_6OGI_126 | No text annotation | ||
| IL_6OGI_188 | C-loop | ||
| IL_6OGI_128 | No text annotation | ||
| IL_6OGI_129 | No text annotation | ||
| IL_6OGI_130 | tSH-tHW-tWW | ||
| IL_6OGI_131 | No text annotation | ||
| IL_6OGI_189 | No text annotation | ||
| IL_6OGI_132 | SSU/LSU pseudoknot | ||
| IL_6OGI_190 | No text annotation | ||
| IL_6OGI_133 | Kink-turn related | ||
| IL_6OGI_135 | tSH-tHW-tHS | ||
| IL_6OGI_136 | No text annotation | ||
| IL_6OGI_137 | tSH-tHW-tHH-tHS | ||
| IL_6OGI_138 | Major groove platform; stack outside cWW | ||
| IL_6OGI_139 | Single stack bend | ||
| IL_6OGI_212 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_140 | No text annotation | ||
| IL_6OGI_191 | No text annotation | ||
| IL_6OGI_141 | No text annotation | ||
| IL_6OGI_213 | Left turn | ||
| IL_6OGI_142 | No text annotation | ||
| IL_6OGI_192 | No text annotation | ||
| IL_6OGI_143 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_145 | Single bulged A | ||
| IL_6OGI_146 | Isolated non-canonical cWW pair | ||
| IL_6OGI_193 | Partly complementary | ||
| IL_6OGI_194 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_147 | Decoding loop related | ||
| IL_6OGI_215 | No text annotation | ||
| IL_6OGI_195 | No text annotation | ||
| IL_6OGI_216 | No text annotation | ||
| IL_6OGI_148 | No text annotation | ||
| IL_6OGI_196 | No text annotation | ||
| IL_6OGI_217 | No text annotation | ||
| IL_6OGI_149 | No text annotation | ||
| IL_6OGI_150 | No text annotation | ||
| IL_6OGI_151 | No text annotation | ||
| IL_6OGI_152 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_153 | No text annotation | ||
| IL_6OGI_218 | No text annotation | ||
| IL_6OGI_154 | No text annotation | ||
| IL_6OGI_197 | No text annotation | ||
| IL_6OGI_156 | No text annotation | ||
| IL_6OGI_157 | Double sheared with non-canonical cWW | ||
| IL_6OGI_158 | No text annotation | ||
| IL_6OGI_198 | No text annotation | ||
| IL_6OGI_159 | No text annotation | ||
| IL_6OGI_219 | No text annotation | ||
| IL_6OGI_199 | No text annotation | ||
| IL_6OGI_160 | Isolated non-canonical cWW pair | ||
| IL_6OGI_200 | Tandem non-canonical cWW pairs | ||
| IL_6OGI_164 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6OGI_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_6OGI_019 | 1/1/30:31, 1/1/474:484, 1/1/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_6OGI_020 | 1/1/32:35, 1/1/445:461, 1/1/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_6OGI_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_6OGI_021 | 1/1/297:301, 1/1/316:325, 1/1/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_6OGI_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6OGI_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6OGI_006 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
| J3_6OGI_007 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_6OGI_008 | 1/1/1344:1349, 1/1/1382:1385, 1/1/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_6OGI_023 | 1/1/1424:1429, 1/1/1564:1565, 1/1/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6OGI_009 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_6OGI_024 | 1/1/2282:2284, 1/1/2384:2395, 1/1/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_6OGI_010 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_6OGI_035 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_6OGI_036 | 1/3/46:47, 1/3/361:367, 1/3/393:395 | No text annotation | geometric J3_4LFB_010 J3_58657.1 | |
| J3_6OGI_037 | 1/3/46:52, 1/3/359:367, 1/3/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_6OGI_015 | 1/3/586:588, 1/3/651:654, 1/3/754:755 | No text annotation | geometric J3_4LFB_011 J3_01633.1 | |
| J3_6OGI_038 | 1/3/586:588, 1/3/651:655, 1/3/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_6OGI_016 | 1/3/826:829, 1/3/857:861, 1/3/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J4_6OGI_001 | 1/1/268:269, 1/1/370:375, 1/1/399:406, 1/1/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_6OGI_002 | 1/1/601:604, 1/1/624:628, 1/1/635:638, 1/1/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6OGI_003 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_6OGI_004 | 1/1/1310:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_6OGI_005 | 1/1/1313:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_6OGI_007 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1830, 1/1/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_6OGI_008 | 1/1/1833:1835, 1/1/1905:1906, 1/1/1924:1933, 1/1/1967:1972 | No text annotation | homologous J4_5J7L_026 NA | |
| J4_6OGI_016 | 1/1/2285:2289, 1/1/2343:2347, 1/1/2370:2372, 1/1/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_6OGI_017 | 1/1/2642:2646, 1/1/2674:2676, 1/1/2731:2735, 1/1/2769:2772 | No text annotation | ||
| J4_6OGI_018 | 1/3/115:122, 1/3/239:240, 1/3/286:289, 1/3/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_6OGI_020 | 1/3/569:577, 1/3/764:769, 1/3/810:821, 1/3/879:881 | No text annotation | ||
| J5_6OGI_001 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:150, 1/1/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_6OGI_002 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_6OGI_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_6OGI_004 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_6OGI_005 | 1/1/2057:2064, 1/1/2446:2453, 1/1/2500:2507, 1/1/2582:2592, 1/1/2601:2611 | No text annotation | ||
| J5_6OGI_010 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J5_6OGI_007 | 1/3/36:39, 1/3/403:406, 1/3/436:440, 1/3/497:500, 1/3/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_6OGI_008 | 1/3/36:39, 1/3/403:406, 1/3/436:442, 1/3/492:500, 1/3/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_6OGI_011 | 1/3/57:61, 1/3/106:113, 1/3/314:316, 1/3/337:339, 1/3/350:355 | No text annotation | ||
| J6_6OGI_001 | 1/1/45:46, 1/1/179:183, 1/1/214:224, 1/1/231:235, 1/1/262:266, 1/1/426:433 | No text annotation | ||
| J6_6OGI_002 | 1/1/2073:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2284, 1/1/2384:2395, 1/1/2421:2436 | No text annotation | ||
| J6_6OGI_003 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2284, 1/1/2384:2395, 1/1/2421:2435 | No text annotation | ||
| J7_6OGI_001 | 1/1/817:822, 1/1/835:837, 1/1/942:946, 1/1/971:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation | ||
| J8_6OGI_002 | 1/1/8:15, 1/1/525:531, 1/1/2018:2023, 1/1/2040:2043, 1/1/2625:2630, 1/1/2788:2791, 1/1/2805:2806, 1/1/2892:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6OGI_022 | No text annotation | ||
| J3_6OGI_005 | No text annotation | ||
| J3_6OGI_011 | No text annotation | ||
| J3_6OGI_012 | No text annotation | ||
| J3_6OGI_013 | No text annotation | ||
| J3_6OGI_014 | No text annotation | ||
| J3_6OGI_025 | No text annotation | ||
| J3_6OGI_026 | No text annotation | ||
| J3_6OGI_027 | No text annotation | ||
| J3_6OGI_039 | No text annotation | ||
| J3_6OGI_028 | No text annotation | ||
| J3_6OGI_029 | No text annotation | ||
| J3_6OGI_017 | No text annotation | ||
| J3_6OGI_030 | No text annotation | ||
| J3_6OGI_040 | No text annotation | ||
| J3_6OGI_031 | No text annotation | ||
| J3_6OGI_041 | No text annotation | ||
| J3_6OGI_032 | No text annotation | ||
| J3_6OGI_042 | No text annotation | ||
| J3_6OGI_018 | No text annotation | ||
| J3_6OGI_033 | No text annotation | ||
| J3_6OGI_043 | No text annotation | ||
| J3_6OGI_034 | No text annotation | ||
| J4_6OGI_006 | No text annotation | ||
| J4_6OGI_009 | No text annotation | ||
| J4_6OGI_010 | No text annotation | ||
| J4_6OGI_011 | No text annotation | ||
| J4_6OGI_012 | No text annotation | ||
| J4_6OGI_019 | No text annotation | ||
| J4_6OGI_013 | No text annotation | ||
| J4_6OGI_014 | No text annotation | ||
| J4_6OGI_021 | No text annotation | ||
| J4_6OGI_015 | tRNA junction | ||
| J5_6OGI_006 | No text annotation | ||
| J5_6OGI_009 | No text annotation | ||
| J8_6OGI_001 | No text annotation |
Coloring options: