Loop HL_6OGI

3D structure

PDB id: 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: GUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCAC
Length: 57 nucleotides
Bulged bases: 6OGI|1|1|U|2132, 6OGI|1|1|G|2133, 6OGI|1|1|A|2134, 6OGI|1|1|A|2135, 6OGI|1|1|C|2145, 6OGI|1|1|C|2146, 6OGI|1|1|U|2172
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OGI|1|1|G|2121
6OGI|1|1|U|2122
6OGI|1|1|G|2123
6OGI|1|1|G|2124
6OGI|1|1|G|2125
6OGI|1|1|A|2126
6OGI|1|1|G|2127
6OGI|1|1|G|2128
6OGI|1|1|C|2129
6OGI|1|1|U|2130
6OGI|1|1|U|2131
6OGI|1|1|U|2132
6OGI|1|1|G|2133
6OGI|1|1|A|2134
6OGI|1|1|A|2135
6OGI|1|1|G|2136
6OGI|1|1|U|2137
6OGI|1|1|G|2138
6OGI|1|1|U|2139
6OGI|1|1|G|2140
6OGI|1|1|G|2141
6OGI|1|1|A|2142
6OGI|1|1|C|2143
6OGI|1|1|G|2144
6OGI|1|1|C|2145
6OGI|1|1|C|2146
6OGI|1|1|A|2147
6OGI|1|1|G|2148
6OGI|1|1|U|2149
6OGI|1|1|C|2150
6OGI|1|1|U|2151
6OGI|1|1|G|2152
6OGI|1|1|C|2153
6OGI|1|1|A|2154
6OGI|1|1|U|2155
6OGI|1|1|G|2156
6OGI|1|1|G|2157
6OGI|1|1|A|2158
6OGI|1|1|G|2159
6OGI|1|1|C|2160
6OGI|1|1|C|2161
6OGI|1|1|G|2162
6OGI|1|1|A|2163
6OGI|1|1|C|2164
6OGI|1|1|C|2165
6OGI|1|1|U|2166
6OGI|1|1|U|2167
6OGI|1|1|G|2168
6OGI|1|1|A|2169
6OGI|1|1|A|2170
6OGI|1|1|A|2171
6OGI|1|1|U|2172
6OGI|1|1|A|2173
6OGI|1|1|C|2174
6OGI|1|1|C|2175
6OGI|1|1|A|2176
6OGI|1|1|C|2177

Current chains

Chain 1: 23S ribosomal RNA

Nearby chains

Chain 5: Transfer RNA; tRNA
Chain P: 30S ribosomal protein S11
Chain a: 50S ribosomal protein L1

HL_6OGI_050