HL_6OGI_054

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

6OGI|1|1|G|2325, 6OGI|1|1|C|2326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGI_054 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1487

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

6OGI|1|1|U|2324
6OGI|1|1|G|2325
6OGI|1|1|C|2326
6OGI|1|1|A|2327
6OGI|1|1|A|2328
6OGI|1|1|U|2329
6OGI|1|1|G|2330
6OGI|1|1|G|2331

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27