HL_6OGI_080

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6OGI|1|3|U|421, 6OGI|1|3|C|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGI_080 not in the Motif Atlas

Homologous match to HL_6CZR_082

Geometric discrepancy: 0.5955

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

6OGI|1|3|C|419
6OGI|1|3|U|420
6OGI|1|3|U|421
6OGI|1|3|C|422
6OGI|1|3|G|423
6OGI|1|3|G|424

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S3

Chain I

30S ribosomal protein S4