HL_6OGI_081

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6OGI|1|3|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGI_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2766

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6OGI|1|3|G|462
6OGI|1|3|U|463
6OGI|1|3|U|464
6OGI|1|3|A|465
6OGI|1|3|A|466
6OGI|1|3|U|467
6OGI|1|3|A|468
6OGI|1|3|C|469
6OGI|1|3|C|470

Current chains

Chain 3

16S ribosomal RNA

Nearby chains