HL_6OIG_001

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

6OIG|1|5|A|40

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_001 not in the Motif Atlas

Homologous match to HL_8C3A_001

Geometric discrepancy: 0.2307

The information below is about HL_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6OIG|1|5|U|38
6OIG|1|5|A|39
6OIG|1|5|A|40
6OIG|1|5|G|41
6OIG|1|5|C|42
6OIG|1|5|A|43
6OIG|1|5|U|44
6OIG|1|5|A|45

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28

Chain o

60S ribosomal protein L42-A