RNA 3D Hub //

6OIG Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6OIG_0091/5/303:312Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_6OIG_0201/5/876:885No text annotation
homologous
HL_8C3A_020
NA
HL_6OIG_0411/5/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_6OIG_0461/5/2135:2145No text annotation
homologous
HL_5TBW_046
NA
HL_6OIG_0611/5/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_6OIG_0751/8/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_17803.1

Problematic loops

#loop idProblemSequence
HL_6OIG_001No text annotation
HL_6OIG_002No text annotation
HL_6OIG_003No text annotation
HL_6OIG_004No text annotation
HL_6OIG_005T-loop with 2 stacked bulged bases
HL_6OIG_006No text annotation
HL_6OIG_007T-loop with unstacked turn
HL_6OIG_008No text annotation
HL_6OIG_010GNRA
HL_6OIG_011GNRA
HL_6OIG_012No text annotation
HL_6OIG_013GNRA
HL_6OIG_014T-loop with 2 stacked bulged bases
HL_6OIG_015No text annotation
HL_6OIG_016GNRA
HL_6OIG_017GNRA
HL_6OIG_018No text annotation
HL_6OIG_019GNRA
HL_6OIG_021No text annotation
HL_6OIG_022Externally structured
HL_6OIG_023Mini UNCG
HL_6OIG_024T-loop related
HL_6OIG_025GNRA
HL_6OIG_026No text annotation
HL_6OIG_027No text annotation
HL_6OIG_028No text annotation
HL_6OIG_029No text annotation
HL_6OIG_079Mini UNCG
HL_6OIG_030GNRA
HL_6OIG_031T-loop with 2 stacked bulged bases
HL_6OIG_032Pseudoknot geometry with 3' bulge
HL_6OIG_033tRNA D-loop
HL_6OIG_080GNRA variation
HL_6OIG_034No text annotation
HL_6OIG_035No text annotation
HL_6OIG_036GNRA
HL_6OIG_037No text annotation
HL_6OIG_038No text annotation
HL_6OIG_039No text annotation
HL_6OIG_040No text annotation
HL_6OIG_042GNRA
HL_6OIG_043UNCG
HL_6OIG_044No text annotation
HL_6OIG_045No text annotation
HL_6OIG_047GNRA
HL_6OIG_048GNRA
HL_6OIG_049No text annotation
HL_6OIG_050No text annotation
HL_6OIG_051No text annotation
HL_6OIG_052No text annotation
HL_6OIG_081No text annotation
HL_6OIG_053No text annotation
HL_6OIG_054No text annotation
HL_6OIG_055No text annotation
HL_6OIG_056No text annotation
HL_6OIG_057No text annotation
HL_6OIG_058Pseudoknot geometry
HL_6OIG_082No text annotation
HL_6OIG_059No text annotation
HL_6OIG_060GNRA
HL_6OIG_062No text annotation
HL_6OIG_083No text annotation
HL_6OIG_063No text annotation
HL_6OIG_064No text annotation
HL_6OIG_065GNRA
HL_6OIG_066GNRA
HL_6OIG_067Ribsomal LSU H95
HL_6OIG_068No text annotation
HL_6OIG_069Mini UNCG
HL_6OIG_070No text annotation
HL_6OIG_071No text annotation
HL_6OIG_072Mini UNCG
HL_6OIG_073No text annotation
HL_6OIG_074GNRA
HL_6OIG_076No text annotation
HL_6OIG_077No text annotation
HL_6OIG_078No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6OIG_0361/5/983:985,
1/5/1099:1100		Single bulged G
homologous
IL_5TBW_037
NA
IL_6OIG_0491/5/1187:1194,
1/5/1314:1319		No text annotation
geometric
IL_5TBW_051
NA
IL_6OIG_0511/5/1207:1209,
1/5/1296:1297		Single bulged U
homologous
IL_8C3A_056
NA
IL_6OIG_0591/5/1398:1400,
1/5/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_6OIG_1501/5/1501:1505,
1/5/1513:1515		C-loop
homologous
IL_8P9A_290
IL_63596.12
IL_6OIG_0701/5/1669:1670,
1/5/1778:1780		Single bulged C
geometric
IL_5TBW_069
NA
IL_6OIG_0791/5/1940:1942,
1/5/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6OIG_0961/5/2520:2526,
1/5/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_6OIG_0991/5/2718:2721,
1/5/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_6OIG_1111/5/3004:3007,
1/5/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_6OIG_1291/5/3328:3330,
1/5/3373:3378		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_6OIG_1361/7/28:29,
1/7/49:52		Minor groove platform
homologous
IL_5TBW_374
NA
IL_6OIG_1621/7/28:30,
1/7/47:52		No text annotation
homologous
IL_4WF9_114
NA
IL_6OIG_1371/7/29:30,
1/7/47:49		Single stack bend
geometric
IL_5TBW_009
NA

Problematic loops

#loop idProblemSequence
IL_6OIG_001Isolated cWS basepair
IL_6OIG_143No text annotation
IL_6OIG_002No text annotation
IL_6OIG_003No text annotation
IL_6OIG_004No text annotation
IL_6OIG_005tSH-tHW-tHH-tHS
IL_6OIG_1448x7 Sarcin-Ricin; G-bulge
IL_6OIG_006No text annotation
IL_6OIG_007No text annotation
IL_6OIG_008Isolated non-canonical cWW pair
IL_6OIG_145No text annotation
IL_6OIG_009No text annotation
IL_6OIG_010No text annotation
IL_6OIG_011No text annotation
IL_6OIG_012Single bulged U
IL_6OIG_013Single bulged A
IL_6OIG_014No text annotation
IL_6OIG_015Triple sheared with non-canonical cWW
IL_6OIG_016Isolated non-canonical cWW pair
IL_6OIG_017No text annotation
IL_6OIG_018Single bulged A
IL_6OIG_146No text annotation
IL_6OIG_019No text annotation
IL_6OIG_147No text annotation
IL_6OIG_020No text annotation
IL_6OIG_021Isolated non-canonical cWW pair
IL_6OIG_022No text annotation
IL_6OIG_023No text annotation
IL_6OIG_024Single bulged A
IL_6OIG_025Single bulged U
IL_6OIG_026No text annotation
IL_6OIG_027Isolated non-canonical cWW pair
IL_6OIG_028tHW-tHW cross-strand stack
IL_6OIG_148Quadruple sheared
IL_6OIG_029Triple sheared with non-canonical cWW
IL_6OIG_030Major groove platform with extra cWW
IL_6OIG_031Single bulged U
IL_6OIG_032Multiple bulged bases
IL_6OIG_033Isolated non-canonical cWW pair
IL_6OIG_163Single stack bend
IL_6OIG_034No text annotation
IL_6OIG_035180 degree turn
IL_6OIG_037No text annotation
IL_6OIG_1647x7 Sarcin-Ricin with intercalated A; G-bulge
IL_6OIG_038Minor groove platform
IL_6OIG_039C-loop
IL_6OIG_040No text annotation
IL_6OIG_041Isolated non-canonical cWW pair
IL_6OIG_042No text annotation
IL_6OIG_165Isolated non-canonical cWW pair
IL_6OIG_043Tandem non-canonical cWW pairs
IL_6OIG_044Single bulged A
IL_6OIG_045Isolated non-canonical cWW pair
IL_6OIG_046UAA/GAN
IL_6OIG_047SSU/LSU pseudoknot
IL_6OIG_048Single bulged U
IL_6OIG_050No text annotation
IL_6OIG_052Kink-turn
IL_6OIG_053Single stack bend
IL_6OIG_054No text annotation
IL_6OIG_055Major groove platform with extra cWW
IL_6OIG_056No text annotation
IL_6OIG_149No text annotation
IL_6OIG_057Single bulged A
IL_6OIG_058Kink-turn
IL_6OIG_0607x6 Sarcin-Ricin; G-bulge
IL_6OIG_061No text annotation
IL_6OIG_062UAA/GAN
IL_6OIG_063No text annotation
IL_6OIG_151No text annotation
IL_6OIG_064No text annotation
IL_6OIG_065Single bulged U
IL_6OIG_152No text annotation
IL_6OIG_066No text annotation
IL_6OIG_067No text annotation
IL_6OIG_068Triple sheared
IL_6OIG_153No text annotation
IL_6OIG_069Isolated non-canonical cWW pair
IL_6OIG_071Single stack bend
IL_6OIG_072No text annotation
IL_6OIG_073No text annotation
IL_6OIG_074No text annotation
IL_6OIG_075No text annotation
IL_6OIG_076No text annotation
IL_6OIG_077Major groove platform; stack outside cWW
IL_6OIG_078tSH-tSH-tHH-tHS
IL_6OIG_080No text annotation
IL_6OIG_081Single bulged A
IL_6OIG_082Kink-turn related
IL_6OIG_083No text annotation
IL_6OIG_166Major groove intercalation
IL_6OIG_084Isolated non-canonical cWW with bulges
IL_6OIG_085Single bulged U
IL_6OIG_086No text annotation
IL_6OIG_154No text annotation
IL_6OIG_087No text annotation
IL_6OIG_088No text annotation
IL_6OIG_089Major groove platform with extra pair
IL_6OIG_090No text annotation
IL_6OIG_091Single bulged U
IL_6OIG_092Minor groove platform
IL_6OIG_093Isolated tHS basepair with bulges
IL_6OIG_155No text annotation
IL_6OIG_094No text annotation
IL_6OIG_156No text annotation
IL_6OIG_095No text annotation
IL_6OIG_157No text annotation
IL_6OIG_097Single bulged A
IL_6OIG_098Isolated tHS basepair with bulges
IL_6OIG_100Single stack bend
IL_6OIG_101No text annotation
IL_6OIG_167No text annotation
IL_6OIG_102No text annotation
IL_6OIG_103No text annotation
IL_6OIG_104Major groove platform
IL_6OIG_105Isolated non-canonical cWW with bulges
IL_6OIG_106No text annotation
IL_6OIG_107Isolated non-canonical cWW pair
IL_6OIG_158No text annotation
IL_6OIG_108Major groove platform with intercalation
IL_6OIG_109Isolated non-canonical cWW pair
IL_6OIG_110Single bulged A
IL_6OIG_112Isolated non-canonical cWW pair
IL_6OIG_1138x7 Sarcin-Ricin; G-bulge
IL_6OIG_114Major groove minor groove platform with tHH
IL_6OIG_115UAA/GAN related
IL_6OIG_116No text annotation
IL_6OIG_117UAA/GAN
IL_6OIG_118No text annotation
IL_6OIG_168Tandem non-canonical cWW pairs
IL_6OIG_159Triple non-canonical cWW pairs
IL_6OIG_119Isolated non-canonical cWW pair
IL_6OIG_120Single bulged A
IL_6OIG_121No text annotation
IL_6OIG_122Single bulged U
IL_6OIG_123No text annotation
IL_6OIG_169No text annotation
IL_6OIG_160No text annotation
IL_6OIG_124Isolated cWH basepair
IL_6OIG_125Tandem non-canonical cWW pairs
IL_6OIG_126Tandem non-canonical cWW pairs
IL_6OIG_127Single bulged U
IL_6OIG_170No text annotation
IL_6OIG_128Isolated non-canonical cWW pair
IL_6OIG_130No text annotation
IL_6OIG_161No text annotation
IL_6OIG_131Single bulged U
IL_6OIG_132Double sheared; A in syn
IL_6OIG_133Multiple bulged bases
IL_6OIG_134Single bulged A
IL_6OIG_135Minor groove platform related
IL_6OIG_138Symmetric double minor groove platform
IL_6OIG_1398x7 Sarcin-Ricin; G-bulge
IL_6OIG_140Isolated non-canonical cWW pair
IL_6OIG_141Isolated non-canonical cWW with bulges
IL_6OIG_142Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6OIG_0011/5/113:123,
1/5/149:158,
1/5/263:267		No text annotation
J3_6OIG_0181/5/113:124,
1/5/144:158,
1/5/263:267		No text annotation
J3_6OIG_0221/5/986:987,
1/5/1062:1066,
1/5/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_6OIG_0321/5/1537:1542,
1/5/1551:1561,
1/5/1579:1584		No text annotation
J3_6OIG_0101/5/1631:1634,
1/5/1639:1645,
1/5/1810:1811		No text annotation
J3_6OIG_0121/5/2529:2532,
1/5/2547:2563,
1/5/2578:2581		No text annotation
homologous
J3_8P9A_060
J3_76247.1
J3_6OIG_0271/5/2651:2653,
1/5/2754:2765,
1/5/2793:2798		No text annotation
homologous
J3_8P9A_061
J3_04772.1
J3_6OIG_0291/5/3171:3176,
1/5/3212:3220,
1/5/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J4_6OIG_0031/5/1451:1457,
1/5/1475:1476,
1/5/1877:1880,
1/5/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_34212.1
J4_6OIG_0061/5/2130:2134,
1/5/2146:2150,
1/5/2186:2190,
1/5/2317:2322		No text annotation
homologous
J4_8C3A_006
NA
J5_6OIG_0021/5/658:663,
1/5/799:802,
1/5/941:944,
1/5/1375:1376,
1/5/1431:1437		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_6OIG_0041/5/1898:1914,
1/5/1938:1939,
1/5/2109:2110,
1/5/2114:2122,
1/5/2331:2337		No text annotation
J5_6OIG_0051/5/1901:1914,
1/5/1938:1939,
1/5/2109:2110,
1/5/2114:2122,
1/5/2331:2336		No text annotation
J6_6OIG_0021/5/2416:2419,
1/5/2611:2614,
1/5/2627:2628,
1/5/2650:2653,
1/5/2754:2765,
1/5/2793:2804		No text annotation
J7_6OIG_0011/5/949:954,
1/5/967:969,
1/5/1113:1117,
1/5/1141:1146,
1/5/1157:1161,
1/5/1338:1339,
1/5/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_6OIG_019No text annotation
J3_6OIG_020No text annotation
J3_6OIG_021No text annotation
J3_6OIG_002No text annotation
J3_6OIG_031No text annotation
J3_6OIG_003No text annotation
J3_6OIG_004No text annotation
J3_6OIG_005No text annotation
J3_6OIG_023No text annotation
J3_6OIG_006No text annotation
J3_6OIG_007No text annotation
J3_6OIG_008No text annotation
J3_6OIG_009No text annotation
J3_6OIG_024No text annotation
J3_6OIG_025No text annotation
J3_6OIG_026No text annotation
J3_6OIG_011No text annotation
J3_6OIG_013No text annotation
J3_6OIG_028No text annotation
J3_6OIG_014No text annotation
J3_6OIG_015No text annotation
J3_6OIG_030No text annotation
J3_6OIG_016No text annotation
J3_6OIG_017No text annotation
J4_6OIG_001No text annotation
J4_6OIG_002No text annotation
J4_6OIG_004No text annotation
J4_6OIG_005No text annotation
J4_6OIG_007No text annotation
J4_6OIG_008No text annotation
J4_6OIG_009No text annotation
J5_6OIG_001No text annotation
J5_6OIG_008No text annotation
J5_6OIG_003No text annotation
J5_6OIG_006No text annotation
J5_6OIG_007No text annotation
J6_6OIG_001No text annotation

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