HL_6OIG_016

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_016 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.3233

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OIG|1|5|U|707
6OIG|1|5|G|708
6OIG|1|5|A|709
6OIG|1|5|A|710
6OIG|1|5|A|711
6OIG|1|5|G|712

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L18-A

Chain a

60S ribosomal protein L28