HL_6OIG_019

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_019 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.2297

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OIG|1|5|G|844
6OIG|1|5|G|845
6OIG|1|5|A|846
6OIG|1|5|A|847
6OIG|1|5|A|848
6OIG|1|5|C|849

Current chains

Chain 5

25S ribosomal RNA

Nearby chains