HL_6OIG_023

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6OIG|1|5|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_023 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.2526

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6OIG|1|5|C|1023
6OIG|1|5|G|1024
6OIG|1|5|A|1025
6OIG|1|5|A|1026
6OIG|1|5|A|1027
6OIG|1|5|U|1028
6OIG|1|5|G|1029

Current chains

Chain 5

25S ribosomal RNA

Nearby chains