HL_6OIG_033

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAGCUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_033 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3726

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

6OIG|1|5|G|1543
6OIG|1|5|G|1544
6OIG|1|5|A|1545
6OIG|1|5|A|1546
6OIG|1|5|G|1547
6OIG|1|5|C|1548
6OIG|1|5|U|1549
6OIG|1|5|C|1550

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain j

60S ribosomal protein L37-A