HL_6OIG_034

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAUUUUAUGCAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|C|1563
6OIG|1|5|U|1564
6OIG|1|5|G|1565
6OIG|1|5|A|1566
6OIG|1|5|U|1567
6OIG|1|5|U|1568
6OIG|1|5|U|1569
6OIG|1|5|U|1570
6OIG|1|5|A|1571
6OIG|1|5|U|1572
6OIG|1|5|G|1573
6OIG|1|5|C|1574
6OIG|1|5|A|1575
6OIG|1|5|G|1576

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain X

60S ribosomal protein L25