HL_6OIG_035
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 6OIG|1|5|U|1606, 6OIG|1|5|U|1607
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OIG_035 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.2926
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6OIG|1|5|G|1599
6OIG|1|5|U|1600
6OIG|1|5|U|1601
6OIG|1|5|A|1602
6OIG|1|5|A|1603
6OIG|1|5|G|1604
6OIG|1|5|A|1605
6OIG|1|5|U|1606
6OIG|1|5|U|1607
6OIG|1|5|C|1608
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L25
- Chain g
- 60S ribosomal protein L34-A
Coloring options: