HL_6OIG_039

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6OIG|1|5|C|1762

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_039 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1907

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6OIG|1|5|C|1759
6OIG|1|5|A|1760
6OIG|1|5|C|1761
6OIG|1|5|C|1762
6OIG|1|5|U|1763
6OIG|1|5|U|1764
6OIG|1|5|U|1765
6OIG|1|5|G|1766

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A