HL_6OIG_044

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGGUAGUGAGGGUCGCUUGCUACAACG

Length

28 nucleotides

Bulged bases

6OIG|1|5|C|2084

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|C|1951
6OIG|1|5|G|1952
6OIG|1|5|G|1953
6OIG|1|5|G|1954
6OIG|1|5|U|1955
6OIG|1|5|A|1956
6OIG|1|5|G|1957
6OIG|1|5|U|1958
6OIG|1|5|G|1959
6OIG|1|5|A|1960
6OIG|1|5|G|1961
6OIG|1|5|G|1962
6OIG|1|5|G|2076
6OIG|1|5|U|2077
6OIG|1|5|C|2078
6OIG|1|5|G|2079
6OIG|1|5|C|2080
6OIG|1|5|U|2081
6OIG|1|5|U|2082
6OIG|1|5|G|2083
6OIG|1|5|C|2084
6OIG|1|5|U|2085
6OIG|1|5|A|2086
6OIG|1|5|C|2087
6OIG|1|5|A|2088
6OIG|1|5|A|2093
6OIG|1|5|C|2094
6OIG|1|5|G|2095

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A