HL_6OIG_051

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6OIG|1|5|A|2372, 6OIG|1|5|A|2373, 6OIG|1|5|C|2374

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.199

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6OIG|1|5|G|2369
6OIG|1|5|G|2370
6OIG|1|5|G|2371
6OIG|1|5|A|2372
6OIG|1|5|A|2373
6OIG|1|5|C|2374
6OIG|1|5|G|2375
6OIG|1|5|G|2376
6OIG|1|5|G|2377
6OIG|1|5|C|2378

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3