HL_6OIG_055

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6OIG|1|5|G|2618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_055 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.3408

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6OIG|1|5|C|2616
6OIG|1|5|U|2617
6OIG|1|5|G|2618
6OIG|1|5|G|2619
6OIG|1|5|G|2620
6OIG|1|5|G|2621
6OIG|1|5|C|2622
6OIG|1|5|G|2623
6OIG|1|5|G|2624

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29