HL_6OIG_058

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_058 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.218

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6OIG|1|5|C|2693
6OIG|1|5|A|2694
6OIG|1|5|A|2695
6OIG|1|5|A|2696
6OIG|1|5|A|2697
6OIG|1|5|G|2698
6OIG|1|5|G|2699
6OIG|1|5|G|2700

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain T

60S ribosomal protein L21-A

Chain o

60S ribosomal protein L42-A