HL_6OIG_079
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 6OIG|1|5|U|1351, 6OIG|1|5|A|1352, 6OIG|1|5|U|1353, 6OIG|1|5|G|1354, 6OIG|1|5|U|1356
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OIG_079 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3779
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
6OIG|1|5|U|1347
6OIG|1|5|U|1348
6OIG|1|5|G|1349
6OIG|1|5|A|1350
6OIG|1|5|U|1351
6OIG|1|5|A|1352
6OIG|1|5|U|1353
6OIG|1|5|G|1354
6OIG|1|5|A|1355
6OIG|1|5|U|1356
6OIG|1|5|G|1357
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain Q
- 60S ribosomal protein L18-A
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