HL_6OIG_080

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_080 not in the Motif Atlas

Homologous match to HL_8P9A_145

Geometric discrepancy: 0.4701

The information below is about HL_8P9A_145

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6OIG|1|5|G|1544
6OIG|1|5|A|1545
6OIG|1|5|A|1546
6OIG|1|5|G|1547
6OIG|1|5|C|1548
6OIG|1|5|U|1549

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain j

60S ribosomal protein L37-A