HL_6OJ2_038

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_038 not in the Motif Atlas

Homologous match to HL_4WT8_217

Geometric discrepancy: 0.434

The information below is about HL_4WT8_217

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6OJ2|1|QW|G|53
6OJ2|1|QW|U|54
6OJ2|1|QW|U|55
6OJ2|1|QW|C|56
6OJ2|1|QW|G|57
6OJ2|1|QW|A|58
6OJ2|1|QW|U|59
6OJ2|1|QW|C|60
6OJ2|1|QW|C|61

Current chains

Chain QW

E-site tRNAAla(GGC)

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA