HL_6OJ2_059

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

6OJ2|1|RA|U|614, 6OJ2|1|RA|G|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_059 not in the Motif Atlas

Homologous match to HL_7A0S_019

Geometric discrepancy: 0.2869

The information below is about HL_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6OJ2|1|RA|C|611
6OJ2|1|RA|G|612
6OJ2|1|RA|U|613
6OJ2|1|RA|U|614
6OJ2|1|RA|G|615
6OJ2|1|RA|A|616
6OJ2|1|RA|G|617

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4