HL_6OJ2_071

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

6OJ2|1|RA|G|1176, 6OJ2|1|RA|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_071 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.3376

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6OJ2|1|RA|G|1171
6OJ2|1|RA|G|1173
6OJ2|1|RA|A|1174
6OJ2|1|RA|U|1175
6OJ2|1|RA|G|1176
6OJ2|1|RA|A|1177
6OJ2|1|RA|C|1178

Current chains

Chain RA

23S rRNA

Nearby chains