HL_6OJ2_091

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6OJ2|1|RA|A|2030, 6OJ2|1|RA|A|2031, 6OJ2|1|RA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_091 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0995

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6OJ2|1|RA|G|2027
6OJ2|1|RA|U|2028
6OJ2|1|RA|G|2029
6OJ2|1|RA|A|2030
6OJ2|1|RA|A|2031
6OJ2|1|RA|G|2032
6OJ2|1|RA|A|2033
6OJ2|1|RA|U|2034
6OJ2|1|RA|G|2035
6OJ2|1|RA|C|2036

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3