HL_6OJ2_095

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6OJ2|1|RA|A|2268, 6OJ2|1|RA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_095 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0934

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6OJ2|1|RA|C|2264
6OJ2|1|RA|U|2265
6OJ2|1|RA|A|2266
6OJ2|1|RA|A|2267
6OJ2|1|RA|A|2268
6OJ2|1|RA|A|2269
6OJ2|1|RA|G|2270
6OJ2|1|RA|G|2271
6OJ2|1|RA|U|2272
6OJ2|1|RA|A|2273
6OJ2|1|RA|A|2274
6OJ2|1|RA|C|2275
6OJ2|1|RA|G|2276

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16