HL_6OJ2_176

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6OJ2|1|YA|A|781, 6OJ2|1|YA|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_176 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.0993

The information below is about HL_7A0S_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6OJ2|1|YA|U|779
6OJ2|1|YA|G|780
6OJ2|1|YA|A|781
6OJ2|1|YA|A|782
6OJ2|1|YA|A|783
6OJ2|1|YA|A|784
6OJ2|1|YA|G|785

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2