HL_6OJ2_178

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

6OJ2|1|YA|C|885, 6OJ2|1|YA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_178 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2936

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6OJ2|1|YA|C|884
6OJ2|1|YA|C|885
6OJ2|1|YA|C|886
6OJ2|1|YA|A|887
6OJ2|1|YA|C|888
6OJ2|1|YA|C|889
6OJ2|1|YA|A|890
6OJ2|1|YA|G|892

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13