3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAUAACG
Length
8 nucleotides
Bulged bases
6OJ2|1|YA|U|958, 6OJ2|1|YA|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OJ2_179 not in the Motif Atlas
Homologous match to HL_7RQB_027
Geometric discrepancy: 0.0943
The information below is about HL_7RQB_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

6OJ2|1|YA|C|955
6OJ2|1|YA|G|956
6OJ2|1|YA|A|957
6OJ2|1|YA|U|958
6OJ2|1|YA|A|959
6OJ2|1|YA|A|960
6OJ2|1|YA|C|961
6OJ2|1|YA|G|962

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YB
5S ribosomal RNA; 5S rRNA
Chain YQ
50S ribosomal protein L16

Coloring options:


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