3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AUGGCAU
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OJ2_228 not in the Motif Atlas
Homologous match to HL_8VU0_002
Geometric discrepancy: 0.598
The information below is about HL_8VU0_002
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6OJ2|1|QY|A|32
6OJ2|1|QY|U|33
6OJ2|1|QY|G|34
6OJ2|1|QY|G|35
6OJ2|1|QY|C|36
6OJ2|1|QY|A|37
6OJ2|1|QY|U|38

Current chains

Chain QY
A-site tRNAAla(GGC)

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain QL
30S ribosomal protein S12
Chain QX
mRNA
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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