HL_6OJ2_228
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGGCAU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OJ2_228 not in the Motif Atlas
- Homologous match to HL_8VU0_002
- Geometric discrepancy: 0.598
- The information below is about HL_8VU0_002
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 349
Unit IDs
6OJ2|1|QY|A|32
6OJ2|1|QY|U|33
6OJ2|1|QY|G|34
6OJ2|1|QY|G|35
6OJ2|1|QY|C|36
6OJ2|1|QY|A|37
6OJ2|1|QY|U|38
Current chains
- Chain QY
- A-site tRNAAla(GGC)
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QL
- 30S ribosomal protein S12
- Chain QX
- mRNA
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: