HL_6OJ2_237

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUACGGG

Length

8 nucleotides

Bulged bases

6OJ2|1|XA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_237 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3987

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6OJ2|1|XA|C|341
6OJ2|1|XA|C|342
6OJ2|1|XA|U|343
6OJ2|1|XA|A|344
6OJ2|1|XA|C|345
6OJ2|1|XA|G|346
6OJ2|1|XA|G|347
6OJ2|1|XA|G|348

Current chains

Chain XA

16S rRNA

Nearby chains

Chain YO

50S ribosomal protein L14

Chain YT

50S ribosomal protein L19