HL_6OJ2_238
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAGCUGGGAGAG
- Length
- 14 nucleotides
- Bulged bases
- 6OJ2|1|XY|G|15, 6OJ2|1|XY|C|16, 6OJ2|1|XY|U|17, 6OJ2|1|XY|G|18, 6OJ2|1|XY|G|19, 6OJ2|1|XY|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OJ2_238 not in the Motif Atlas
- Homologous match to HL_4V9I_038
- Geometric discrepancy: 0.5111
- The information below is about HL_4V9I_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68572.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6OJ2|1|XY|C|11
6OJ2|1|XY|U|12
6OJ2|1|XY|C|13
6OJ2|1|XY|A|14
6OJ2|1|XY|G|15
6OJ2|1|XY|C|16
6OJ2|1|XY|U|17
6OJ2|1|XY|G|18
6OJ2|1|XY|G|19
6OJ2|1|XY|G|20
6OJ2|1|XY|A|21
6OJ2|1|XY|G|22
6OJ2|1|XY|A|23
6OJ2|1|XY|G|24
Current chains
- Chain XY
- A-site tRNAAla(GGC)
Nearby chains
- Chain XV
- Transfer RNA; tRNA
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YZ
- 50S ribosomal protein L25
Coloring options: