HL_6OKK_008
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUGAGAAAUAG
- Length
- 12 nucleotides
- Bulged bases
- 6OKK|1|A|A|409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OKK_008 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0919
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6OKK|1|A|C|399
6OKK|1|A|C|400
6OKK|1|A|U|401
6OKK|1|A|G|402
6OKK|1|A|A|403
6OKK|1|A|G|404
6OKK|1|A|A|405
6OKK|1|A|A|406
6OKK|1|A|A|407
6OKK|1|A|U|408
6OKK|1|A|A|409
6OKK|1|A|G|410
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain H
- 40S ribosomal protein S6
- Chain L
- 40S ribosomal protein S8
- Chain a
- 40S ribosomal protein S24
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