HL_6OKK_012
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUUAAAACCU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OKK_012 not in the Motif Atlas
- Geometric match to HL_4UYK_001
- Geometric discrepancy: 0.3827
- The information below is about HL_4UYK_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6OKK|1|A|A|528
6OKK|1|A|U|529
6OKK|1|A|U|530
6OKK|1|A|U|531
6OKK|1|A|A|532
6OKK|1|A|A|533
6OKK|1|A|A|534
6OKK|1|A|A|535
6OKK|1|A|C|536
6OKK|1|A|C|537
6OKK|1|A|U|538
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S9
- Chain a
- 40S ribosomal protein S24
Coloring options: