HL_6OKK_020
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6OKK|1|A|U|1073
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OKK_020 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1383
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6OKK|1|A|G|1066
6OKK|1|A|A|1067
6OKK|1|A|U|1068
6OKK|1|A|C|1069
6OKK|1|A|A|1070
6OKK|1|A|G|1071
6OKK|1|A|A|1072
6OKK|1|A|U|1073
6OKK|1|A|A|1074
6OKK|1|A|C|1075
6OKK|1|A|C|1076
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S11
- Chain c
- 40S ribosomal protein S26
Coloring options: