HL_6OKK_025

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUGAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OKK_025 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3281

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6OKK|1|A|A|1397
6OKK|1|A|U|1400
6OKK|1|A|G|1401
6OKK|1|A|A|1402
6OKK|1|A|U|1403

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein SA

Chain G

40S ribosomal protein S5