HL_6OKK_030

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OKK_030 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.134

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OKK|1|A|C|1797
6OKK|1|A|G|1798
6OKK|1|A|A|1799
6OKK|1|A|A|1800
6OKK|1|A|A|1801
6OKK|1|A|G|1802

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S18

Chain Y

40S ribosomal protein S19