HL_6OKK_031
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6OKK|1|A|A|1856
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OKK_031 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.1413
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6OKK|1|A|A|1847
6OKK|1|A|U|1848
6OKK|1|A|U|1849
6OKK|1|A|G|1850
6OKK|1|A|C|1851
6OKK|1|A|A|1852
6OKK|1|A|A|1853
6OKK|1|A|U|1854
6OKK|1|A|U|1855
6OKK|1|A|A|1856
6OKK|1|A|U|1857
6OKK|1|A|U|1858
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein S18
- Chain T
- 40S ribosomal protein S29
- Chain X
- 40S ribosomal protein S19
- Chain Y
- 40S ribosomal protein S19
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