HL_6OKK_035

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCAGUUGGUUAG

Length

13 nucleotides

Bulged bases

6OKK|1|g|U|16, 6OKK|1|g|U|17, 6OKK|1|g|G|18, 6OKK|1|g|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OKK_035 not in the Motif Atlas

Homologous match to HL_4WT8_218

Geometric discrepancy: 0.4535

The information below is about HL_4WT8_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OKK|1|g|C|11
6OKK|1|g|G|12
6OKK|1|g|C|13
6OKK|1|g|A|14
6OKK|1|g|G|15
6OKK|1|g|U|16
6OKK|1|g|U|17
6OKK|1|g|G|18
6OKK|1|g|G|19
6OKK|1|g|U|20
6OKK|1|g|U|21
6OKK|1|g|A|22
6OKK|1|g|G|23

Current chains

Chain g

E-site tRNA

Nearby chains

Chain P

40S ribosomal protein S11