HL_6OLE_010

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGACCCCCUUCGCGGGGGGGAUG

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_010 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.199

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLE|1|S2|C|188
6OLE|1|S2|U|189
6OLE|1|S2|G|190
6OLE|1|S2|A|191
6OLE|1|S2|C|192
6OLE|1|S2|C|193
6OLE|1|S2|C|194
6OLE|1|S2|C|195
6OLE|1|S2|C|196
6OLE|1|S2|U|197
6OLE|1|S2|U|198
6OLE|1|S2|C|199
6OLE|1|S2|G|200
6OLE|1|S2|C|201
6OLE|1|S2|G|202
6OLE|1|S2|G|203
6OLE|1|S2|G|204
6OLE|1|S2|G|205
6OLE|1|S2|G|206
6OLE|1|S2|G|207
6OLE|1|S2|G|208
6OLE|1|S2|A|209
6OLE|1|S2|U|210
6OLE|1|S2|G|211

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8