6OLE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6OLE_001 | 1/D/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
| HL_6OLE_002 | 1/D/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_6OLE_003 | 1/D/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6OLE_004 | 1/D/120:130 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_6OLE_123 | 1/E/32:45 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_6OLE_005 | 1/E/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6OLE_006 | 1/E/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6OLE_007 | 1/S2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6OLE_008 | 1/S2/69:80 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_6OLE_009 | 1/S2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6OLE_010 | 1/S2/188:211 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_6OLE_011 | 1/S2/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6OLE_012 | 1/S2/322:329 | No text annotation | ||
| HL_6OLE_013 | 1/S2/377:387 | No text annotation | ||
| HL_6OLE_014 | 1/S2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6OLE_015 | 1/S2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6OLE_016 | 1/S2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6OLE_017 | 1/S2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6OLE_019 | 1/S2/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6OLE_020 | 1/S2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6OLE_022 | 1/S2/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6OLE_023 | 1/S2/833:841 | No text annotation | geometric HL_4V88_190 NA | |
| HL_6OLE_025 | 1/S2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6OLE_026 | 1/S2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6OLE_027 | 1/S2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6OLE_028 | 1/S2/1113:1120 | No text annotation | ||
| HL_6OLE_029 | 1/S2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6OLE_030 | 1/S2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6OLE_031 | 1/S2/1245:1254 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_6OLE_032 | 1/S2/1294:1305 | No text annotation | ||
| HL_6OLE_033 | 1/S2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6OLE_034 | 1/S2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6OLE_035 | 1/S2/1416:1424 | No text annotation | ||
| HL_6OLE_036 | 1/S2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6OLE_037 | 1/S2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6OLE_038 | 1/S2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6OLE_039 | 1/S2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6OLE_040 | 1/S2/1749:1785 | No text annotation | geometric HL_2ZNI_001 HL_75660.7 | |
| HL_6OLE_041 | 1/S2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6OLE_042 | 1/t/37:44 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_6OLE_043 | 1/t/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6OLE_044 | 1/t/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6OLE_046 | 1/t/199:208 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_6OLE_047 | 1/t/218:222 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6OLE_048 | 1/t/283:292 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_6OLE_049 | 1/t/308:317 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6OLE_050 | 1/t/362:367 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6OLE_051 | 1/t/387:392 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6OLE_052 | 1/t/517:630 | No text annotation | ||
| HL_6OLE_055 | 1/t/1161:1166 | No text annotation | geometric HL_2Y8Y_001 HL_40612.1 | |
| HL_6OLE_057 | 1/t/1300:1309 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6OLE_127 | 1/t/1347:1356 | No text annotation | ||
| HL_6OLE_059 | 1/t/1372:1377 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6OLE_061 | 1/t/1417:1432 | No text annotation | geometric HL_4V9F_003 HL_75660.7 | |
| HL_6OLE_062 | 1/t/1461:1468 | UNCG variation | geometric HL_6VMY_004 HL_51020.2 | |
| HL_6OLE_063 | 1/t/1543:1548 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6OLE_064 | 1/t/1575:1584 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6OLE_065 | 1/t/1609:1617 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6OLE_066 | 1/t/1657:1662 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6OLE_068 | 1/t/1798:1805 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_6OLE_069 | 1/t/1845:1851 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6OLE_070 | 1/t/1867:1874 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6OLE_073 | 1/t/2066:2250 | No text annotation | ||
| HL_6OLE_074 | 1/t/2296:2301 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6OLE_075 | 1/t/2355:2363 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_6OLE_076 | 1/t/2399:2405 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6OLE_077 | 1/t/2437:2442 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_6OLE_079 | 1/t/2502:2511 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6OLE_081 | 1/t/2557:2562 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6OLE_082 | 1/t/2603:2611 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6OLE_083 | 1/t/2643:2649 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_6OLE_084 | 1/t/2683:2691 | No text annotation | ||
| HL_6OLE_085 | 1/t/2717:2721 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6OLE_086 | 1/t/2771:2778 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6OLE_087 | 1/t/2789:2795 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6OLE_088 | 1/t/2851:2856 | UNCG | geometric HL_4PMI_004 HL_61337.2 | |
| HL_6OLE_090 | 1/t/3585:3589 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6OLE_091 | 1/t/3610:3620 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_6OLE_092 | 1/t/3639:3645 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6OLE_093 | 1/t/3695:3700 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6OLE_094 | 1/t/3728:3738 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6OLE_095 | 1/t/3767:3775 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6OLE_096 | 1/t/3844:3853 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6OLE_098 | 1/t/4104:4111 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_6OLE_099 | 1/t/4155:4163 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_6OLE_100 | 1/t/4172:4184 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6OLE_101 | 1/t/4212:4220 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_6OLE_102 | 1/t/4232:4239 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6OLE_103 | 1/t/4263:4271 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6OLE_104 | 1/t/4283:4288 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6OLE_105 | 1/t/4314:4324 | No text annotation | geometric HL_4V83_139 NA | |
| HL_6OLE_106 | 1/t/4379:4387 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6OLE_107 | 1/t/4436:4443 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6OLE_108 | 1/t/4459:4465 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_6OLE_109 | 1/t/4502:4507 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6OLE_110 | 1/t/4565:4570 | GNRA | homologous HL_8C3A_066 NA | |
| HL_6OLE_111 | 1/t/4608:4613 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6OLE_112 | 1/t/4650:4664 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6OLE_113 | 1/t/4735:4817 | No text annotation | ||
| HL_6OLE_114 | 1/t/4865:4872 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_6OLE_115 | 1/t/4933:4941 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6OLE_116 | 1/t/4979:4986 | No text annotation | geometric HL_7VTI_001 HL_89167.2 | |
| HL_6OLE_117 | 1/u/13:22 | No text annotation | homologous HL_5HR6_001 HL_78347.5 | |
| HL_6OLE_118 | 1/u/31:39 | tRNA anticodon loop | homologous HL_6ORD_036 NA | |
| HL_6OLE_119 | 1/u/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6ORD_037 NA | |
| HL_6OLE_120 | 1/v/13:22 | No text annotation | ||
| HL_6OLE_121 | 1/v/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_81376.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6OLE_124 | No text annotation | ||
| HL_6OLE_018 | No text annotation | ||
| HL_6OLE_021 | No text annotation | ||
| HL_6OLE_024 | No text annotation | ||
| HL_6OLE_125 | No text annotation | ||
| HL_6OLE_045 | No text annotation | ||
| HL_6OLE_053 | No text annotation | ||
| HL_6OLE_054 | No text annotation | ||
| HL_6OLE_056 | No text annotation | ||
| HL_6OLE_058 | No text annotation | ||
| HL_6OLE_060 | No text annotation | ||
| HL_6OLE_128 | No text annotation | ||
| HL_6OLE_067 | GNRA | ||
| HL_6OLE_071 | No text annotation | ||
| HL_6OLE_072 | No text annotation | ||
| HL_6OLE_078 | No text annotation | ||
| HL_6OLE_080 | GNRA | ||
| HL_6OLE_089 | No text annotation | ||
| HL_6OLE_097 | Mini UNCG | ||
| HL_6OLE_126 | No text annotation | ||
| HL_6OLE_122 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6OLE_001 | 1/D/13:19, 1/t/409:415 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
| IL_6OLE_002 | 1/D/25:26, 1/t/342:344 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_6OLE_003 | 1/D/32:33, 1/t/333:336 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6OLE_290 | 1/D/64:66, 1/D/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_6OLE_005 | 1/D/139:141, 1/t/16:18 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_6OLE_006 | 1/D/143:144, 1/t/12:14 | Single bulged U | homologous IL_5TBW_003 NA | |
| IL_6OLE_007 | 1/D/149:151, 1/t/6:7 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6OLE_008 | 1/E/15:16, 1/E/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6OLE_009 | 1/E/21:27, 1/E/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6OLE_010 | 1/E/28:31, 1/E/46:51 | No text annotation | homologous IL_7A0S_104 IL_05192.7 | |
| IL_6OLE_011 | 1/E/32:36, 1/E/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_6OLE_012 | 1/E/71:78, 1/E/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.2 | |
| IL_6OLE_013 | 1/E/79:81, 1/E/95:97 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_6OLE_014 | 1/E/82:85, 1/E/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6OLE_015 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_01003.2 | |
| IL_6OLE_017 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6OLE_018 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_6OLE_019 | 1/S2/41:47, 1/S2/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_6OLE_020 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6OLE_021 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6OLE_022 | 1/S2/63:68, 1/S2/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6OLE_023 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_71625.2 | |
| IL_6OLE_258 | 1/S2/108:112, 1/S2/349:353 | Triple non-canonical cWW pairs | geometric IL_8VMB_003 IL_71154.2 | |
| IL_6OLE_024 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.2 | |
| IL_6OLE_259 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_6OLE_260 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_8P9A_382 IL_31545.1 | |
| IL_6OLE_026 | 1/S2/123:125, 1/S2/338:341 | No text annotation | ||
| IL_6OLE_261 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_6OLE_262 | 1/S2/152:154, 1/S2/164:166 | No text annotation | homologous IL_8P9A_384 IL_87720.1 | |
| IL_6OLE_030 | 1/S2/216:219, 1/S2/302:309 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_6OLE_031 | 1/S2/223:288, 1/S2/295:298 | No text annotation | ||
| IL_6OLE_032 | 1/S2/312:314, 1/S2/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6OLE_033 | 1/S2/317:319, 1/S2/332:333 | No text annotation | ||
| IL_6OLE_034 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6OLE_035 | 1/S2/366:371, 1/S2/393:394 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_6OLE_036 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6OLE_037 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6OLE_038 | 1/S2/459:461, 1/S2/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6OLE_291 | 1/S2/491:495, 1/S2/508:509 | C-loop | homologous IL_8CRE_414 IL_26900.1 | |
| IL_6OLE_292 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | homologous IL_8P9A_398 IL_28408.2 | |
| IL_6OLE_040 | 1/S2/527:534, 1/S2/549:558 | No text annotation | ||
| IL_6OLE_042 | 1/S2/563:565, 1/S2/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_6OLE_043 | 1/S2/566:569, 1/S2/581:584 | No text annotation | geometric IL_7LO9_004 NA | |
| IL_6OLE_044 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6OLE_045 | 1/S2/606:608, 1/S2/635:636 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_6OLE_046 | 1/S2/611:617, 1/S2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6OLE_047 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_6OLE_048 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6OLE_049 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6OLE_050 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6OLE_051 | 1/S2/802:803, 1/S2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6OLE_052 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6OLE_293 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_8CRE_430 IL_59049.2 | |
| IL_6OLE_054 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_01003.2 | |
| IL_6OLE_055 | 1/S2/877:879, 1/S2/907:909 | Isolated non-canonical cWW pair | geometric IL_5J7L_061 NA | |
| IL_6OLE_056 | 1/S2/879:881, 1/S2/905:907 | Isolated cWH basepair | geometric IL_1L9A_007 NA | |
| IL_6OLE_057 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6OLE_265 | 1/S2/925:926, 1/S2/1015:1017 | Single bulged U | geometric IL_6UFH_004 IL_97561.2 | |
| IL_6OLE_266 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8P9A_419 IL_15225.2 | |
| IL_6OLE_060 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6OLE_061 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6OLE_062 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6OLE_063 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_6OLE_064 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6OLE_065 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6OLE_066 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6OLE_067 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_01003.2 | |
| IL_6OLE_068 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6OLE_069 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6OLE_070 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6OLE_071 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6OLE_072 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6OLE_073 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6OLE_074 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6OLE_075 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_6OLE_076 | 1/S2/1281:1287, 1/S2/1314:1316 | No text annotation | ||
| IL_6OLE_267 | 1/S2/1281:1290, 1/S2/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_6OLE_077 | 1/S2/1287:1290, 1/S2/1309:1314 | No text annotation | ||
| IL_6OLE_078 | 1/S2/1291:1293, 1/S2/1306:1308 | No text annotation | homologous IL_4V88_448 NA | |
| IL_6OLE_079 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6OLE_268 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_6OLE_269 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_6OLE_081 | 1/S2/1333:1335, 1/S2/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6OLE_270 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_6OLE_083 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6OLE_271 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_6OLE_085 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_15225.2 | |
| IL_6OLE_086 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6OLE_087 | 1/S2/1408:1409, 1/S2/1432:1438 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_6OLE_088 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6OLE_089 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_2OE8_001 IL_71625.2 | |
| IL_6OLE_272 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_6OLE_090 | 1/S2/1550:1558, 1/S2/1577:1582 | 180 degree turn | geometric IL_5J7L_055 NA | |
| IL_6OLE_091 | 1/S2/1560:1562, 1/S2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.2 | |
| IL_6OLE_092 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6OLE_093 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6OLE_094 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_8P9A_453 IL_25873.2 | |
| IL_6OLE_095 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6OLE_096 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | homologous IL_8CRE_469 IL_73099.1 | |
| IL_6OLE_097 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6OLE_098 | 1/S2/1717:1726, 1/S2/1807:1816 | No text annotation | ||
| IL_6OLE_273 | 1/S2/1717:1729, 1/S2/1805:1816 | No text annotation | ||
| IL_6OLE_099 | 1/S2/1726:1729, 1/S2/1805:1807 | No text annotation | ||
| IL_6OLE_100 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6OLE_101 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6OLE_102 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_3SZX_001 IL_01003.2 | |
| IL_6OLE_103 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_6OLE_105 | 1/t/26:27, 1/t/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6OLE_106 | 1/t/30:37, 1/t/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_6OLE_107 | 1/t/81:88, 1/t/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6OLE_108 | 1/t/118:124, 1/t/143:151 | No text annotation | ||
| IL_6OLE_109 | 1/t/128:131, 1/t/137:139 | No text annotation | ||
| IL_6OLE_110 | 1/t/158:160, 1/t/267:269 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
| IL_6OLE_111 | 1/t/161:164, 1/t/263:266 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_6OLE_112 | 1/t/165:171, 1/t/257:262 | No text annotation | ||
| IL_6OLE_275 | 1/t/171:185, 1/t/248:257 | No text annotation | ||
| IL_6OLE_113 | 1/t/381:384, 1/t/395:408 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_6OLE_114 | 1/t/437:440, 1/t/1283:1287 | No text annotation | ||
| IL_6OLE_115 | 1/t/450:453, 1/t/689:692 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_6OLE_116 | 1/t/454:456, 1/t/686:688 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_87720.1 | |
| IL_6OLE_276 | 1/t/456:459, 1/t/683:686 | No text annotation | geometric IL_7LYF_005 NA | |
| IL_6OLE_118 | 1/t/461:467, 1/t/675:681 | No text annotation | ||
| IL_6OLE_277 | 1/t/461:469, 1/t/673:681 | No text annotation | ||
| IL_6OLE_119 | 1/t/467:469, 1/t/673:675 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_01003.2 | |
| IL_6OLE_120 | 1/t/469:472, 1/t/670:673 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.2 | |
| IL_6OLE_121 | 1/t/472:475, 1/t/667:670 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6OLE_122 | 1/t/475:481, 1/t/663:667 | No text annotation | ||
| IL_6OLE_123 | 1/t/481:485, 1/t/656:663 | No text annotation | ||
| IL_6OLE_124 | 1/t/486:489, 1/t/653:655 | No text annotation | ||
| IL_6OLE_125 | 1/t/489:490, 1/t/651:653 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_6OLE_127 | 1/t/493:498, 1/t/648:649 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6OLE_128 | 1/t/502:504, 1/t/643:644 | Single bulged A | geometric IL_4R4V_003 IL_14190.2 | |
| IL_6OLE_131 | 1/t/699:700, 1/t/1270:1272 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_6OLE_132 | 1/t/713:715, 1/t/929:933 | No text annotation | ||
| IL_6OLE_133 | 1/t/717:726, 1/t/915:927 | No text annotation | ||
| IL_6OLE_134 | 1/t/727:730, 1/t/912:914 | No text annotation | ||
| IL_6OLE_135 | 1/t/731:733, 1/t/909:911 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_01003.2 | |
| IL_6OLE_136 | 1/t/735:743, 1/t/898:907 | No text annotation | ||
| IL_6OLE_137 | 1/t/1057:1063, 1/t/1202:1219 | No text annotation | ||
| IL_6OLE_279 | 1/t/1057:1067, 1/t/1195:1219 | No text annotation | ||
| IL_6OLE_138 | 1/t/1065:1067, 1/t/1195:1200 | No text annotation | ||
| IL_6OLE_139 | 1/t/1068:1072, 1/t/1189:1194 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6OLE_140 | 1/t/1072:1074, 1/t/1188:1189 | Single stack bend | geometric IL_4WF9_007 IL_15011.2 | |
| IL_6OLE_280 | 1/t/1072:1077, 1/t/1184:1189 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6OLE_141 | 1/t/1074:1077, 1/t/1184:1188 | No text annotation | ||
| IL_6OLE_143 | 1/t/1156:1158, 1/t/1169:1171 | Isolated cWH basepair | geometric IL_5F5F_001 IL_10892.2 | |
| IL_6OLE_144 | 1/t/1340:1343, 1/t/1362:1365 | No text annotation | ||
| IL_6OLE_281 | 1/t/1340:1344, 1/t/1359:1365 | No text annotation | ||
| IL_6OLE_145 | 1/t/1343:1344, 1/t/1359:1362 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.2 | |
| IL_6OLE_146 | 1/t/1408:1412, 1/t/1437:1442 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_6OLE_147 | 1/t/1413:1417, 1/t/1432:1436 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_6OLE_148 | 1/t/1449:1450, 1/t/1478:1480 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6OLE_149 | 1/t/1456:1458, 1/t/1471:1472 | Single base bend | geometric IL_5IBB_340 IL_15011.2 | |
| IL_6OLE_150 | 1/t/1502:1504, 1/t/1637:1639 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_01003.2 | |
| IL_6OLE_151 | 1/t/1504:1508, 1/t/1630:1637 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_6OLE_152 | 1/t/1532:1533, 1/t/1558:1560 | Single bulged G | geometric IL_4WF9_023 IL_28408.2 | |
| IL_6OLE_153 | 1/t/1533:1537, 1/t/1554:1558 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_6OLE_154 | 1/t/1568:1571, 1/t/1587:1589 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_6OLE_155 | 1/t/1572:1574, 1/t/1585:1586 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_6OLE_156 | 1/t/1606:1608, 1/t/1618:1622 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_6OLE_157 | 1/t/1653:1655, 1/t/1664:1666 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_6OLE_158 | 1/t/1668:1670, 1/t/1829:1832 | No text annotation | ||
| IL_6OLE_159 | 1/t/1676:1703, 1/t/1822:1823 | No text annotation | ||
| IL_6OLE_160 | 1/t/1705:1707, 1/t/1819:1820 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6OLE_161 | 1/t/1714:1719, 1/t/1774:1779 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6OLE_282 | 1/t/1714:1720, 1/t/1772:1779 | No text annotation | ||
| IL_6OLE_162 | 1/t/1719:1720, 1/t/1772:1774 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_6OLE_163 | 1/t/1721:1726, 1/t/1768:1771 | C-loop | homologous IL_5TBW_040 NA | |
| IL_6OLE_164 | 1/t/1728:1731, 1/t/1763:1766 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_6OLE_165 | 1/t/1731:1733, 1/t/1761:1763 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_6OLE_295 | 1/t/1736:1739, 1/t/1757:1758 | No text annotation | ||
| IL_6OLE_168 | 1/t/1796:1798, 1/t/1805:1806 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_6OLE_169 | 1/t/1839:1841, 1/t/1855:1857 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6OLE_170 | 1/t/1886:1890, 1/t/2048:2052 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6OLE_171 | 1/t/1892:1899, 1/t/2045:2046 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6OLE_172 | 1/t/1899:1901, 1/t/2044:2045 | No text annotation | ||
| IL_6OLE_173 | 1/t/1901:1903, 1/t/2043:2044 | Single bulged C | geometric IL_3SN2_001 IL_05642.2 | |
| IL_6OLE_174 | 1/t/1907:1914, 1/t/2034:2039 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_6OLE_175 | 1/t/1914:1925, 1/t/2019:2034 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6OLE_176 | 1/t/1927:1929, 1/t/2016:2017 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6OLE_177 | 1/t/1938:1946, 1/t/2003:2007 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_6OLE_178 | 1/t/2064:2066, 1/t/2250:2252 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_6OLE_179 | 1/t/2269:2271, 1/t/2321:2324 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6OLE_180 | 1/t/2278:2280, 1/t/2313:2314 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6OLE_181 | 1/t/2281:2288, 1/t/2308:2312 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6OLE_182 | 1/t/2291:2293, 1/t/2304:2305 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6OLE_183 | 1/t/2337:2343, 1/t/3829:3834 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6OLE_184 | 1/t/2385:2388, 1/t/2762:2763 | Major groove platform; stack outside cWW | geometric IL_7A0S_046 IL_74641.2 | |
| IL_6OLE_185 | 1/t/2394:2399, 1/t/2405:2408 | No text annotation | ||
| IL_6OLE_186 | 1/t/2425:2429, 1/t/2488:2493 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6OLE_187 | 1/t/2456:2458, 1/t/2478:2479 | Minor groove platform | geometric IL_4LFB_038 IL_34520.2 | |
| IL_6OLE_188 | 1/t/2521:2526, 1/t/2751:2753 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 IL_76400.1 | |
| IL_6OLE_189 | 1/t/2528:2529, 1/t/2747:2749 | Single bulged U | geometric IL_2R8S_004 IL_97561.2 | |
| IL_6OLE_190 | 1/t/2568:2572, 1/t/2731:2735 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_6OLE_191 | 1/t/2592:2593, 1/t/2703:2705 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6OLE_192 | 1/t/2593:2594, 1/t/2701:2703 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6OLE_193 | 1/t/2625:2627, 1/t/2664:2667 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_6OLE_194 | 1/t/2630:2632, 1/t/2660:2661 | Single bulged G | geometric IL_7D7W_002 IL_28408.2 | |
| IL_6OLE_195 | 1/t/2635:2641, 1/t/2651:2657 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6OLE_196 | 1/t/2811:2817, 1/t/3821:3824 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6OLE_197 | 1/t/2823:2825, 1/t/3813:3815 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6OLE_198 | 1/t/2826:2829, 1/t/3811:3812 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_6OLE_285 | 1/t/2826:2834, 1/t/3808:3812 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6OLE_199 | 1/t/2829:2834, 1/t/3808:3811 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6OLE_200 | 1/t/2846:2851, 1/t/2856:2862 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6OLE_201 | 1/t/2868:2870, 1/t/3581:3583 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6OLE_202 | 1/t/2875:2876, 1/t/3573:3576 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6OLE_203 | 1/t/3603:3604, 1/t/3798:3800 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_6OLE_204 | 1/t/3631:3636, 1/t/3648:3655 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6OLE_205 | 1/t/3671:3674, 1/t/3720:3721 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6OLE_206 | 1/t/3675:3676, 1/t/3716:3719 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_6OLE_207 | 1/t/3679:3685, 1/t/3710:3713 | No text annotation | ||
| IL_6OLE_208 | 1/t/3686:3692, 1/t/3703:3709 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_6OLE_209 | 1/t/3751:3752, 1/t/3782:3785 | Bulged stacked bases | homologous IL_5TBW_089 NA | |
| IL_6OLE_210 | 1/t/3752:3763, 1/t/3779:3782 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6OLE_211 | 1/t/3866:3869, 1/t/4525:4527 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6OLE_212 | 1/t/3871:3873, 1/t/4520:4523 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6OLE_213 | 1/t/3884:3886, 1/t/4350:4351 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6OLE_214 | 1/t/3887:3888, 1/t/4346:4349 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6OLE_215 | 1/t/3898:3900, 1/t/4143:4146 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6OLE_216 | 1/t/4052:4058, 1/t/4123:4126 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6OLE_217 | 1/t/4064:4072, 1/t/4076:4083 | No text annotation | ||
| IL_6OLE_218 | 1/t/4153:4154, 1/t/4164:4166 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6OLE_219 | 1/t/4205:4207, 1/t/4225:4229 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_6OLE_220 | 1/t/4257:4260, 1/t/4274:4277 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6OLE_286 | 1/t/4309:4312, 1/t/4326:4327 | Single stack bend | geometric IL_5TBW_101 NA | |
| IL_6OLE_222 | 1/t/4362:4363, 1/t/4404:4406 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_6OLE_287 | 1/t/4362:4365, 1/t/4402:4406 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6OLE_223 | 1/t/4363:4365, 1/t/4402:4404 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6OLE_224 | 1/t/4365:4367, 1/t/4401:4402 | Major groove platform | homologous IL_5TBW_104 NA | |
| IL_6OLE_225 | 1/t/4367:4369, 1/t/4397:4401 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_6OLE_226 | 1/t/4374:4378, 1/t/4388:4392 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6OLE_227 | 1/t/4415:4416, 1/t/4488:4490 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6OLE_228 | 1/t/4418:4420, 1/t/4482:4486 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6OLE_229 | 1/t/4420:4421, 1/t/4479:4482 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6OLE_230 | 1/t/4428:4430, 1/t/4451:4453 | Isolated non-canonical cWW pair | homologous IL_5TBW_110 NA | |
| IL_6OLE_288 | 1/t/4428:4432, 1/t/4447:4453 | No text annotation | ||
| IL_6OLE_231 | 1/t/4430:4432, 1/t/4447:4451 | No text annotation | ||
| IL_6OLE_232 | 1/t/4457:4459, 1/t/4465:4467 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_6OLE_233 | 1/t/4499:4500, 1/t/4509:4511 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6OLE_234 | 1/t/4542:4544, 1/t/4683:4685 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10892.2 | |
| IL_6OLE_235 | 1/t/4544:4547, 1/t/4679:4683 | Double sheared | geometric IL_4KZD_002 IL_58355.2 | |
| IL_6OLE_236 | 1/t/4552:4554, 1/t/4580:4582 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_6OLE_237 | 1/t/4558:4565, 1/t/4570:4576 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_6OLE_238 | 1/t/4586:4591, 1/t/4631:4635 | No text annotation | ||
| IL_6OLE_239 | 1/t/4594:4599, 1/t/4624:4628 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6OLE_240 | 1/t/4600:4602, 1/t/4621:4623 | Isolated non-canonical cWW contact | geometric IL_4V88_395 NA | |
| IL_6OLE_241 | 1/t/4603:4604, 1/t/4617:4620 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6OLE_242 | 1/t/4642:4647, 1/t/4667:4672 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_6OLE_243 | 1/t/4701:4704, 1/t/4916:4918 | No text annotation | ||
| IL_6OLE_244 | 1/t/4704:4708, 1/t/4911:4916 | No text annotation | ||
| IL_6OLE_245 | 1/t/4843:4847, 1/t/4888:4892 | Triple non-canonical cWW pairs | geometric IL_8S95_002 IL_71154.2 | |
| IL_6OLE_246 | 1/t/4849:4855, 1/t/4881:4886 | No text annotation | ||
| IL_6OLE_247 | 1/t/4857:4859, 1/t/4878:4879 | No text annotation | ||
| IL_6OLE_248 | 1/t/4930:4933, 1/t/4941:4944 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_6OLE_249 | 1/t/4950:4952, 1/t/5015:5017 | Isolated non-canonical cWW pair | geometric IL_5UNE_007 IL_01003.2 | |
| IL_6OLE_250 | 1/t/4954:4955, 1/t/5011:5013 | No text annotation | ||
| IL_6OLE_251 | 1/t/4958:4960, 1/t/5003:5008 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6OLE_252 | 1/t/4961:4967, 1/t/4997:5002 | No text annotation | ||
| IL_6OLE_253 | 1/t/4970:4972, 1/t/4993:4994 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_6OLE_254 | 1/t/4972:4975, 1/t/4990:4993 | Double sheared | geometric IL_4V9F_100 IL_58355.2 | |
| IL_6OLE_255 | 1/v/11:13, 1/v/22:24 | No text annotation | homologous IL_4V90_066 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6OLE_004 | No text annotation | ||
| IL_6OLE_016 | Isolated non-canonical cWW pair | ||
| IL_6OLE_025 | No text annotation | ||
| IL_6OLE_027 | No text annotation | ||
| IL_6OLE_028 | No text annotation | ||
| IL_6OLE_029 | Tandem non-canonical cWW pairs | ||
| IL_6OLE_039 | No text annotation | ||
| IL_6OLE_263 | C-loop with extra cWW pair | ||
| IL_6OLE_041 | No text annotation | ||
| IL_6OLE_053 | No text annotation | ||
| IL_6OLE_264 | No text annotation | ||
| IL_6OLE_058 | Tandem non-canonical cWW pairs | ||
| IL_6OLE_059 | No text annotation | ||
| IL_6OLE_080 | Tandem non-canonical cWW pairs | ||
| IL_6OLE_082 | Isolated non-canonical cWW pair | ||
| IL_6OLE_084 | Minor groove platform with extra cWW | ||
| IL_6OLE_104 | Isolated non-canonical cWW pair | ||
| IL_6OLE_274 | No text annotation | ||
| IL_6OLE_117 | No text annotation | ||
| IL_6OLE_126 | No text annotation | ||
| IL_6OLE_129 | Isolated non-canonical cWW pair | ||
| IL_6OLE_278 | Multiple bulged bases | ||
| IL_6OLE_130 | No text annotation | ||
| IL_6OLE_294 | No text annotation | ||
| IL_6OLE_142 | Isolated non-canonical cWW pair | ||
| IL_6OLE_166 | No text annotation | ||
| IL_6OLE_283 | No text annotation | ||
| IL_6OLE_167 | Tandem non-canonical cWW pairs | ||
| IL_6OLE_284 | Major groove platform with extra cWW | ||
| IL_6OLE_221 | No text annotation | ||
| IL_6OLE_289 | No text annotation | ||
| IL_6OLE_256 | Single base bend | ||
| IL_6OLE_257 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6OLE_001 | 1/D/19:20, 1/t/374:381, 1/t/408:409 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6OLE_033 | 1/D/19:20, 1/t/374:384, 1/t/395:409 | No text annotation | geometric J3_5TBW_062 NA | |
| J3_6OLE_034 | 1/D/21:24, 1/t/345:361, 1/t/368:373 | No text annotation | geometric J3_5TBW_061 NA | |
| J3_6OLE_002 | 1/D/44:45, 1/D/58:64, 1/D/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_6OLE_035 | 1/E/9:14, 1/E/65:66, 1/E/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_6OLE_004 | 1/S2/40:41, 1/S2/481:489, 1/S2/511:514 | No text annotation | ||
| J3_6OLE_036 | 1/S2/40:47, 1/S2/479:489, 1/S2/511:514 | No text annotation | ||
| J3_6OLE_046 | 1/S2/682:684, 1/S2/918:922, 1/S2/1022:1023 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_6OLE_047 | 1/S2/682:684, 1/S2/918:923, 1/S2/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_6OLE_006 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_6OLE_007 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6OLE_008 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_6OLE_009 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_6OLE_010 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6OLE_011 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6OLE_012 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_6OLE_048 | 1/S2/1339:1345, 1/S2/1384:1389, 1/S2/1481:1487 | No text annotation | homologous J3_8CRE_082 J3_04315.1 | |
| J3_6OLE_014 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_6OLE_015 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_6OLE_016 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J3_6OLE_017 | 1/t/112:118, 1/t/151:158, 1/t/269:272 | No text annotation | ||
| J3_6OLE_038 | 1/t/188:199, 1/t/208:218, 1/t/222:245 | No text annotation | ||
| J3_6OLE_018 | 1/t/442:450, 1/t/692:696, 1/t/1275:1281 | No text annotation | ||
| J3_6OLE_019 | 1/t/1082:1087, 1/t/1148:1151, 1/t/1176:1179 | No text annotation | ||
| J3_6OLE_020 | 1/t/1513:1519, 1/t/1604:1606, 1/t/1622:1625 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6OLE_021 | 1/t/1527:1530, 1/t/1562:1566, 1/t/1591:1596 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6OLE_039 | 1/t/1708:1709, 1/t/1784:1789, 1/t/1813:1818 | No text annotation | ||
| J3_6OLE_023 | 1/t/2372:2378, 1/t/2784:2786, 1/t/2798:2801 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6OLE_024 | 1/t/2381:2384, 1/t/2764:2770, 1/t/2779:2781 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6OLE_025 | 1/t/2419:2424, 1/t/2494:2498, 1/t/2515:2516 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6OLE_041 | 1/t/2430:2435, 1/t/2444:2455, 1/t/2480:2487 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_6OLE_026 | 1/t/2530:2534, 1/t/2551:2554, 1/t/2736:2746 | No text annotation | ||
| J3_6OLE_027 | 1/t/2554:2555, 1/t/2564:2568, 1/t/2735:2736 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6OLE_042 | 1/t/2575:2581, 1/t/2716:2717, 1/t/2721:2728 | No text annotation | ||
| J3_6OLE_028 | 1/t/3908:3910, 1/t/4044:4048, 1/t/4130:4135 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_6OLE_029 | 1/t/4061:4064, 1/t/4083:4098, 1/t/4117:4120 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_6OLE_043 | 1/t/4190:4192, 1/t/4293:4304, 1/t/4332:4337 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6OLE_030 | 1/t/4203:4205, 1/t/4229:4231, 1/t/4240:4245 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6OLE_031 | 1/t/4425:4428, 1/t/4453:4455, 1/t/4469:4475 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_6OLE_044 | 1/t/4710:4732, 1/t/4820:4841, 1/t/4894:4909 | No text annotation | ||
| J3_6OLE_032 | 1/t/4928:4930, 1/t/4944:4950, 1/t/5017:5021 | No text annotation | ||
| J3_6OLE_045 | 1/v/7:27, 1/v/43:50, 1/v/65:67 | No text annotation | ||
| J4_6OLE_001 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_6OLE_002 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_6OLE_003 | 1/S2/685:746, 1/S2/796:801, 1/S2/864:874, 1/S2/912:917 | No text annotation | ||
| J4_6OLE_004 | 1/t/111:112, 1/t/272:277, 1/t/298:304, 1/t/321:324 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_6OLE_005 | 1/t/2344:2350, 1/t/2368:2370, 1/t/2803:2808, 1/t/3827:3828 | No text annotation | ||
| J4_6OLE_006 | 1/t/2385:2389, 1/t/2413:2418, 1/t/2517:2518, 1/t/2756:2763 | No text annotation | ||
| J4_6OLE_007 | 1/t/2388:2389, 1/t/2413:2418, 1/t/2517:2518, 1/t/2756:2762 | No text annotation | ||
| J4_6OLE_008 | 1/t/2597:2598, 1/t/2616:2621, 1/t/2671:2677, 1/t/2697:2698 | No text annotation | ||
| J4_6OLE_009 | 1/t/3605:3609, 1/t/3621:3625, 1/t/3661:3665, 1/t/3792:3797 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_6OLE_010 | 1/t/3667:3669, 1/t/3723:3724, 1/t/3742:3751, 1/t/3785:3790 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_6OLE_011 | 1/t/4193:4197, 1/t/4251:4255, 1/t/4279:4281, 1/t/4290:4292 | No text annotation | homologous J4_8P9A_019 J4_59590.1 | |
| J4_6OLE_012 | 1/t/4549:4552, 1/t/4582:4583, 1/t/4638:4640, 1/t/4674:4677 | No text annotation | ||
| J4_6OLE_013 | 1/u/7:10, 1/u/25:28, 1/u/42:49, 1/u/65:66 | tRNA junction | homologous J4_4V90_004 NA | |
| J4_6OLE_014 | 1/v/7:10, 1/v/25:27, 1/v/43:50, 1/v/65:67 | No text annotation | ||
| J5_6OLE_011 | 1/D/35:42, 1/D/101:106, 1/D/113:114, 1/D/136:137, 1/t/20:21 | No text annotation | ||
| J5_6OLE_002 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:563, 1/S2/592:595, 1/S2/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_6OLE_003 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_6OLE_004 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6OLE_005 | 1/S2/123:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:341 | No text annotation | ||
| J5_6OLE_006 | 1/t/702:704, 1/t/942:970, 1/t/1053:1057, 1/t/1219:1230, 1/t/1245:1268 | No text annotation | ||
| J5_6OLE_007 | 1/t/1318:1323, 1/t/1498:1501, 1/t/1640:1643, 1/t/2267:2269, 1/t/2324:2330 | No text annotation | ||
| J5_6OLE_008 | 1/t/2834:2842, 1/t/2866:2867, 1/t/3584:3585, 1/t/3589:3597, 1/t/3806:3808 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_6OLE_009 | 1/t/3874:3881, 1/t/4354:4362, 1/t/4406:4415, 1/t/4490:4496, 1/t/4514:4519 | No text annotation | ||
| J5_6OLE_010 | 1/t/3891:3894, 1/t/4150:4153, 1/t/4166:4167, 1/t/4189:4190, 1/t/4337:4343 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J6_6OLE_001 | 1/D/33:35, 1/t/21:26, 1/t/57:67, 1/t/74:78, 1/t/105:109, 1/t/326:333 | No text annotation | ||
| J6_6OLE_002 | 1/t/1335:1338, 1/t/1367:1371, 1/t/1378:1382, 1/t/1401:1404, 1/t/1446:1448, 1/t/1481:1486 | No text annotation | ||
| J6_6OLE_003 | 1/t/3891:3894, 1/t/4150:4153, 1/t/4166:4167, 1/t/4189:4192, 1/t/4293:4304, 1/t/4332:4343 | No text annotation | ||
| J7_6OLE_001 | 1/t/1648:1653, 1/t/1666:1667, 1/t/1833:1836, 1/t/1860:1865, 1/t/1876:1880, 1/t/2058:2059, 1/t/2257:2262 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6OLE_003 | No text annotation | ||
| J3_6OLE_005 | No text annotation | ||
| J3_6OLE_037 | No text annotation | ||
| J3_6OLE_013 | No text annotation | ||
| J3_6OLE_049 | No text annotation | ||
| J3_6OLE_040 | No text annotation | ||
| J3_6OLE_022 | No text annotation | ||
| J4_6OLE_015 | No text annotation | ||
| J5_6OLE_001 | No text annotation |
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