HL_6OLE_040

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCGGAGCGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_040 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1986

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLE|1|S2|G|1749
6OLE|1|S2|C|1750
6OLE|1|S2|C|1751
6OLE|1|S2|C|1752
6OLE|1|S2|G|1779
6OLE|1|S2|G|1780
6OLE|1|S2|A|1781
6OLE|1|S2|G|1782
6OLE|1|S2|C|1783
6OLE|1|S2|G|1784
6OLE|1|S2|C|1785

Current chains

Chain S2

18S ribosomal RNA

Nearby chains