HL_6OLE_055

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

6OLE|1|t|U|1162, 6OLE|1|t|C|1163, 6OLE|1|t|C|1164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_055 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.2608

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6OLE|1|t|G|1161
6OLE|1|t|U|1162
6OLE|1|t|C|1163
6OLE|1|t|C|1164
6OLE|1|t|C|1165
6OLE|1|t|C|1166

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L5

Chain K

60S ribosomal protein L10