HL_6OLE_112

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6OLE|1|t|G|4656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_112 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.083

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6OLE|1|t|C|4650
6OLE|1|t|U|4651
6OLE|1|t|G|4652
6OLE|1|t|A|4653
6OLE|1|t|A|4654
6OLE|1|t|C|4655
6OLE|1|t|G|4656
6OLE|1|t|C|4657
6OLE|1|t|C|4658
6OLE|1|t|U|4659
6OLE|1|t|C|4660
6OLE|1|t|U|4661
6OLE|1|t|A|4662
6OLE|1|t|A|4663
6OLE|1|t|G|4664

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L9

Chain P

60S ribosomal protein L13a

Chain n

60S ribosomal protein L40