HL_6OLE_114

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

6OLE|1|t|A|4868, 6OLE|1|t|A|4869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_114 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1113

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLE|1|t|G|4865
6OLE|1|t|G|4866
6OLE|1|t|A|4867
6OLE|1|t|A|4868
6OLE|1|t|A|4869
6OLE|1|t|G|4870
6OLE|1|t|G|4871
6OLE|1|t|C|4872

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L13a